Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS05015 and LU632_RS05020 overlap by 4 nucleotides LU632_RS05020 and LU632_RS05025 overlap by 1 nucleotides LU632_RS05025 and LU632_RS05030 overlap by 5 nucleotides LU632_RS05030 and LU632_RS05035 are separated by 509 nucleotides LU632_RS05035 and LU632_RS05040 overlap by 1 nucleotides
LU632_RS05015: LU632_RS05015 - TIGR03750 family conjugal transfer protein, at 975,732 to 976,088
_RS05015
LU632_RS05020: LU632_RS05020 - TIGR03746 family integrating conjugative element protein, at 976,085 to 976,744
_RS05020
LU632_RS05025: LU632_RS05025 - TIGR03749 family integrating conjugative element protein, at 976,744 to 977,028
_RS05025
LU632_RS05030: LU632_RS05030 - TIGR03752 family integrating conjugative element protein, at 977,024 to 977,569
_RS05030
LU632_RS05035: LU632_RS05035 - TIGR03751 family conjugal transfer lipoprotein, at 978,079 to 978,417
_RS05035
LU632_RS05040: LU632_RS05040 - conjugative transfer ATPase, at 978,417 to 981,281
_RS05040
Position (kb) 977
978 Strain fitness (log2 ratio) -1
0
1
2 at 976.126 kb on + strand at 976.173 kb on + strand, within LU632_RS05020 at 976.236 kb on + strand, within LU632_RS05020 at 976.301 kb on + strand, within LU632_RS05020 at 976.301 kb on + strand, within LU632_RS05020 at 976.302 kb on - strand, within LU632_RS05020 at 976.670 kb on + strand, within LU632_RS05020 at 976.911 kb on - strand, within LU632_RS05025 at 977.189 kb on - strand, within LU632_RS05030 at 977.223 kb on - strand, within LU632_RS05030 at 977.223 kb on - strand, within LU632_RS05030 at 977.288 kb on + strand, within LU632_RS05030 at 977.288 kb on + strand, within LU632_RS05030 at 977.289 kb on - strand, within LU632_RS05030 at 977.289 kb on - strand, within LU632_RS05030 at 977.289 kb on - strand, within LU632_RS05030 at 977.302 kb on + strand, within LU632_RS05030 at 977.302 kb on + strand, within LU632_RS05030 at 977.303 kb on - strand, within LU632_RS05030 at 977.303 kb on - strand, within LU632_RS05030 at 977.435 kb on + strand, within LU632_RS05030 at 977.435 kb on + strand, within LU632_RS05030 at 977.435 kb on + strand, within LU632_RS05030 at 977.435 kb on + strand, within LU632_RS05030 at 977.436 kb on - strand, within LU632_RS05030 at 977.440 kb on - strand, within LU632_RS05030 at 977.440 kb on - strand, within LU632_RS05030 at 977.463 kb on + strand, within LU632_RS05030 at 977.463 kb on + strand, within LU632_RS05030 at 977.464 kb on - strand, within LU632_RS05030 at 977.464 kb on - strand, within LU632_RS05030 at 977.467 kb on + strand, within LU632_RS05030 at 977.467 kb on + strand, within LU632_RS05030 at 977.467 kb on + strand, within LU632_RS05030 at 977.467 kb on + strand, within LU632_RS05030 at 977.468 kb on - strand, within LU632_RS05030 at 977.468 kb on - strand, within LU632_RS05030 at 977.468 kb on - strand, within LU632_RS05030 at 977.500 kb on + strand, within LU632_RS05030 at 977.767 kb on + strand at 977.799 kb on + strand at 977.885 kb on - strand at 977.885 kb on - strand at 977.910 kb on + strand at 977.910 kb on + strand at 977.911 kb on - strand at 978.030 kb on + strand at 978.047 kb on + strand at 978.048 kb on - strand at 978.099 kb on + strand at 978.100 kb on - strand at 978.213 kb on + strand, within LU632_RS05035 at 978.301 kb on + strand, within LU632_RS05035 at 978.301 kb on + strand, within LU632_RS05035 at 978.302 kb on - strand, within LU632_RS05035 at 978.357 kb on - strand, within LU632_RS05035 at 978.357 kb on - strand, within LU632_RS05035 at 978.357 kb on - strand, within LU632_RS05035 at 978.357 kb on - strand, within LU632_RS05035 at 978.368 kb on - strand, within LU632_RS05035 at 978.383 kb on - strand, within LU632_RS05035 at 978.383 kb on - strand, within LU632_RS05035 at 978.565 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 976,126 + +0.4 976,173 + LU632_RS05020 0.13 -0.1 976,236 + LU632_RS05020 0.23 +1.5 976,301 + LU632_RS05020 0.33 +0.4 976,301 + LU632_RS05020 0.33 +0.6 976,302 - LU632_RS05020 0.33 -0.3 976,670 + LU632_RS05020 0.89 -0.3 976,911 - LU632_RS05025 0.59 -0.2 977,189 - LU632_RS05030 0.30 -0.6 977,223 - LU632_RS05030 0.36 -0.3 977,223 - LU632_RS05030 0.36 -0.3 977,288 + LU632_RS05030 0.48 +1.1 977,288 + LU632_RS05030 0.48 +0.9 977,289 - LU632_RS05030 0.49 -0.8 977,289 - LU632_RS05030 0.49 -0.5 977,289 - LU632_RS05030 0.49 +0.1 977,302 + LU632_RS05030 0.51 -0.1 977,302 + LU632_RS05030 0.51 +0.1 977,303 - LU632_RS05030 0.51 -1.6 977,303 - LU632_RS05030 0.51 +0.7 977,435 + LU632_RS05030 0.75 -0.6 977,435 + LU632_RS05030 0.75 -0.4 977,435 + LU632_RS05030 0.75 -0.1 977,435 + LU632_RS05030 0.75 -0.4 977,436 - LU632_RS05030 0.75 +1.5 977,440 - LU632_RS05030 0.76 -0.2 977,440 - LU632_RS05030 0.76 -0.5 977,463 + LU632_RS05030 0.80 -0.7 977,463 + LU632_RS05030 0.80 -0.5 977,464 - LU632_RS05030 0.81 +0.9 977,464 - LU632_RS05030 0.81 +0.1 977,467 + LU632_RS05030 0.81 +0.4 977,467 + LU632_RS05030 0.81 -1.7 977,467 + LU632_RS05030 0.81 +0.5 977,467 + LU632_RS05030 0.81 -0.1 977,468 - LU632_RS05030 0.81 -0.8 977,468 - LU632_RS05030 0.81 +0.1 977,468 - LU632_RS05030 0.81 +0.3 977,500 + LU632_RS05030 0.87 +0.5 977,767 + +0.3 977,799 + +0.4 977,885 - -1.1 977,885 - -0.2 977,910 + +0.6 977,910 + -0.7 977,911 - -0.2 978,030 + -0.3 978,047 + +0.9 978,048 - +1.0 978,099 + +0.5 978,100 - -0.3 978,213 + LU632_RS05035 0.40 -0.4 978,301 + LU632_RS05035 0.65 -0.4 978,301 + LU632_RS05035 0.65 +0.1 978,302 - LU632_RS05035 0.66 -0.0 978,357 - LU632_RS05035 0.82 -0.2 978,357 - LU632_RS05035 0.82 -0.0 978,357 - LU632_RS05035 0.82 +0.1 978,357 - LU632_RS05035 0.82 -0.6 978,368 - LU632_RS05035 0.85 +0.1 978,383 - LU632_RS05035 0.90 -0.6 978,383 - LU632_RS05035 0.90 -0.2 978,565 - +1.9
Or see this region's nucleotide sequence