Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04920 and LU632_RS04925 overlap by 4 nucleotides LU632_RS04925 and LU632_RS04930 are separated by 6 nucleotides LU632_RS04930 and traD are separated by 500 nucleotides
LU632_RS04920: LU632_RS04920 - PilL N-terminal domain-containing protein, at 959,816 to 960,412
_RS04920
LU632_RS04925: LU632_RS04925 - hypothetical protein, at 960,409 to 961,131
_RS04925
LU632_RS04930: LU632_RS04930 - TIGR03759 family integrating conjugative element protein, at 961,138 to 961,842
_RS04930
LU632_RS04935: traD - type IV conjugative transfer system coupling protein TraD, at 962,343 to 963,739
traD
Position (kb) 961
962 Strain fitness (log2 ratio) -2
-1
0
1 at 960.492 kb on + strand, within LU632_RS04925 at 960.492 kb on + strand, within LU632_RS04925 at 960.492 kb on + strand, within LU632_RS04925 at 960.524 kb on + strand, within LU632_RS04925 at 960.525 kb on - strand, within LU632_RS04925 at 960.525 kb on - strand, within LU632_RS04925 at 960.529 kb on + strand, within LU632_RS04925 at 960.529 kb on + strand, within LU632_RS04925 at 960.530 kb on - strand, within LU632_RS04925 at 960.530 kb on - strand, within LU632_RS04925 at 960.591 kb on + strand, within LU632_RS04925 at 960.591 kb on + strand, within LU632_RS04925 at 960.591 kb on + strand, within LU632_RS04925 at 960.594 kb on + strand, within LU632_RS04925 at 961.020 kb on - strand, within LU632_RS04925 at 961.119 kb on + strand at 961.137 kb on + strand at 961.203 kb on + strand at 961.204 kb on - strand at 961.204 kb on - strand at 961.644 kb on + strand, within LU632_RS04930 at 961.645 kb on - strand, within LU632_RS04930 at 961.645 kb on - strand, within LU632_RS04930 at 961.648 kb on + strand, within LU632_RS04930 at 961.648 kb on + strand, within LU632_RS04930 at 961.649 kb on - strand, within LU632_RS04930 at 961.678 kb on - strand, within LU632_RS04930 at 961.683 kb on - strand, within LU632_RS04930 at 961.683 kb on - strand, within LU632_RS04930 at 961.740 kb on + strand, within LU632_RS04930 at 961.741 kb on - strand, within LU632_RS04930 at 961.741 kb on - strand, within LU632_RS04930 at 961.827 kb on + strand at 961.828 kb on - strand at 961.905 kb on + strand at 961.906 kb on - strand at 961.906 kb on - strand at 961.933 kb on + strand at 962.058 kb on - strand at 962.058 kb on - strand at 962.123 kb on + strand at 962.147 kb on + strand at 962.147 kb on + strand at 962.239 kb on + strand at 962.240 kb on - strand at 962.382 kb on + strand at 962.383 kb on - strand at 962.383 kb on - strand at 962.431 kb on + strand at 962.540 kb on - strand, within traD at 962.581 kb on - strand, within traD at 962.598 kb on + strand, within traD at 962.598 kb on + strand, within traD at 962.599 kb on - strand, within traD at 962.622 kb on + strand, within traD at 962.623 kb on - strand, within traD at 962.623 kb on - strand, within traD at 962.750 kb on - strand, within traD at 962.753 kb on + strand, within traD at 962.753 kb on + strand, within traD at 962.754 kb on - strand, within traD at 962.754 kb on - strand, within traD at 962.754 kb on - strand, within traD at 962.754 kb on - strand, within traD at 962.754 kb on - strand, within traD at 962.802 kb on + strand, within traD at 962.803 kb on - strand, within traD at 962.803 kb on - strand, within traD
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 960,492 + LU632_RS04925 0.11 +0.5 960,492 + LU632_RS04925 0.11 -0.1 960,492 + LU632_RS04925 0.11 +1.2 960,524 + LU632_RS04925 0.16 +1.6 960,525 - LU632_RS04925 0.16 -0.6 960,525 - LU632_RS04925 0.16 +0.3 960,529 + LU632_RS04925 0.17 -0.9 960,529 + LU632_RS04925 0.17 +1.5 960,530 - LU632_RS04925 0.17 +0.8 960,530 - LU632_RS04925 0.17 +0.2 960,591 + LU632_RS04925 0.25 -0.7 960,591 + LU632_RS04925 0.25 +0.2 960,591 + LU632_RS04925 0.25 +0.5 960,594 + LU632_RS04925 0.26 +0.5 961,020 - LU632_RS04925 0.85 +0.0 961,119 + +0.5 961,137 + -0.8 961,203 + +0.0 961,204 - -0.1 961,204 - -0.6 961,644 + LU632_RS04930 0.72 +0.5 961,645 - LU632_RS04930 0.72 -1.0 961,645 - LU632_RS04930 0.72 -0.7 961,648 + LU632_RS04930 0.72 +0.2 961,648 + LU632_RS04930 0.72 +0.1 961,649 - LU632_RS04930 0.72 -1.1 961,678 - LU632_RS04930 0.77 -2.4 961,683 - LU632_RS04930 0.77 -0.4 961,683 - LU632_RS04930 0.77 -0.3 961,740 + LU632_RS04930 0.85 +0.3 961,741 - LU632_RS04930 0.86 -0.1 961,741 - LU632_RS04930 0.86 +0.9 961,827 + +0.7 961,828 - -0.1 961,905 + -1.0 961,906 - +0.3 961,906 - -1.1 961,933 + +1.5 962,058 - +0.8 962,058 - +0.5 962,123 + -0.2 962,147 + -0.0 962,147 + -0.5 962,239 + +0.3 962,240 - +0.2 962,382 + -0.3 962,383 - +0.6 962,383 - +0.1 962,431 + +0.2 962,540 - traD LU632_RS04935 0.14 -0.3 962,581 - traD LU632_RS04935 0.17 +0.1 962,598 + traD LU632_RS04935 0.18 -1.1 962,598 + traD LU632_RS04935 0.18 -0.8 962,599 - traD LU632_RS04935 0.18 -0.3 962,622 + traD LU632_RS04935 0.20 -0.4 962,623 - traD LU632_RS04935 0.20 +0.9 962,623 - traD LU632_RS04935 0.20 +0.1 962,750 - traD LU632_RS04935 0.29 -0.7 962,753 + traD LU632_RS04935 0.29 +0.1 962,753 + traD LU632_RS04935 0.29 -0.3 962,754 - traD LU632_RS04935 0.29 -0.5 962,754 - traD LU632_RS04935 0.29 -0.9 962,754 - traD LU632_RS04935 0.29 -1.8 962,754 - traD LU632_RS04935 0.29 +0.3 962,754 - traD LU632_RS04935 0.29 +0.4 962,802 + traD LU632_RS04935 0.33 -0.1 962,803 - traD LU632_RS04935 0.33 +0.6 962,803 - traD LU632_RS04935 0.33 +0.2
Or see this region's nucleotide sequence