Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04725 and LU632_RS04730 are separated by 126 nucleotides LU632_RS04730 and LU632_RS04735 are separated by 132 nucleotides
LU632_RS04725: LU632_RS04725 - transporter substrate-binding domain-containing protein, at 926,307 to 929,459
_RS04725
LU632_RS04730: LU632_RS04730 - DUF1090 domain-containing protein, at 929,586 to 930,020
_RS04730
LU632_RS04735: LU632_RS04735 - fimbria/pilus outer membrane usher protein, at 930,153 to 932,198
_RS04735
Position (kb) 929
930
931 Strain fitness (log2 ratio) -2
-1
0
1
2 at 928.603 kb on - strand, within LU632_RS04725 at 928.603 kb on - strand, within LU632_RS04725 at 928.603 kb on - strand, within LU632_RS04725 at 928.604 kb on + strand, within LU632_RS04725 at 928.723 kb on + strand, within LU632_RS04725 at 928.723 kb on + strand, within LU632_RS04725 at 928.724 kb on - strand, within LU632_RS04725 at 928.731 kb on - strand, within LU632_RS04725 at 928.732 kb on + strand, within LU632_RS04725 at 928.732 kb on + strand, within LU632_RS04725 at 928.732 kb on + strand, within LU632_RS04725 at 928.733 kb on - strand, within LU632_RS04725 at 928.733 kb on - strand, within LU632_RS04725 at 928.807 kb on + strand, within LU632_RS04725 at 928.807 kb on + strand, within LU632_RS04725 at 928.808 kb on - strand, within LU632_RS04725 at 928.923 kb on - strand, within LU632_RS04725 at 928.957 kb on + strand, within LU632_RS04725 at 928.958 kb on - strand, within LU632_RS04725 at 928.958 kb on - strand, within LU632_RS04725 at 928.972 kb on - strand, within LU632_RS04725 at 929.082 kb on - strand, within LU632_RS04725 at 929.082 kb on - strand, within LU632_RS04725 at 929.395 kb on + strand at 929.413 kb on + strand at 929.469 kb on + strand at 929.470 kb on - strand at 929.470 kb on - strand at 929.518 kb on + strand at 929.563 kb on + strand at 929.563 kb on + strand at 929.563 kb on + strand at 929.563 kb on + strand at 929.631 kb on - strand, within LU632_RS04730 at 929.631 kb on - strand, within LU632_RS04730 at 929.727 kb on - strand, within LU632_RS04730 at 929.780 kb on + strand, within LU632_RS04730 at 929.780 kb on + strand, within LU632_RS04730 at 929.781 kb on - strand, within LU632_RS04730 at 929.781 kb on - strand, within LU632_RS04730 at 929.783 kb on + strand, within LU632_RS04730 at 929.892 kb on - strand, within LU632_RS04730 at 929.904 kb on - strand, within LU632_RS04730 at 930.014 kb on + strand at 930.014 kb on + strand at 930.019 kb on - strand at 930.173 kb on + strand at 930.173 kb on + strand at 930.449 kb on + strand, within LU632_RS04735 at 930.471 kb on - strand, within LU632_RS04735 at 930.539 kb on + strand, within LU632_RS04735 at 930.573 kb on - strand, within LU632_RS04735 at 930.573 kb on - strand, within LU632_RS04735 at 930.679 kb on - strand, within LU632_RS04735 at 930.680 kb on + strand, within LU632_RS04735 at 930.680 kb on + strand, within LU632_RS04735 at 930.680 kb on + strand, within LU632_RS04735 at 930.681 kb on - strand, within LU632_RS04735 at 930.681 kb on - strand, within LU632_RS04735 at 930.704 kb on + strand, within LU632_RS04735 at 930.704 kb on + strand, within LU632_RS04735 at 930.704 kb on + strand, within LU632_RS04735 at 930.704 kb on + strand, within LU632_RS04735 at 930.705 kb on - strand, within LU632_RS04735 at 930.705 kb on - strand, within LU632_RS04735 at 930.812 kb on + strand, within LU632_RS04735 at 930.992 kb on + strand, within LU632_RS04735 at 930.992 kb on + strand, within LU632_RS04735
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 928,603 - LU632_RS04725 0.73 -1.1 928,603 - LU632_RS04725 0.73 +0.7 928,603 - LU632_RS04725 0.73 +0.9 928,604 + LU632_RS04725 0.73 +1.4 928,723 + LU632_RS04725 0.77 +0.0 928,723 + LU632_RS04725 0.77 +0.7 928,724 - LU632_RS04725 0.77 -0.6 928,731 - LU632_RS04725 0.77 -0.4 928,732 + LU632_RS04725 0.77 -0.8 928,732 + LU632_RS04725 0.77 -0.1 928,732 + LU632_RS04725 0.77 -0.1 928,733 - LU632_RS04725 0.77 -0.1 928,733 - LU632_RS04725 0.77 -0.7 928,807 + LU632_RS04725 0.79 -0.3 928,807 + LU632_RS04725 0.79 -2.3 928,808 - LU632_RS04725 0.79 -0.7 928,923 - LU632_RS04725 0.83 +1.3 928,957 + LU632_RS04725 0.84 -0.9 928,958 - LU632_RS04725 0.84 +0.3 928,958 - LU632_RS04725 0.84 -1.1 928,972 - LU632_RS04725 0.85 -0.1 929,082 - LU632_RS04725 0.88 -0.1 929,082 - LU632_RS04725 0.88 -0.4 929,395 + -1.3 929,413 + +0.1 929,469 + -0.1 929,470 - +0.4 929,470 - +0.2 929,518 + -1.1 929,563 + +0.3 929,563 + -0.7 929,563 + +0.5 929,563 + -0.7 929,631 - LU632_RS04730 0.10 -1.4 929,631 - LU632_RS04730 0.10 +1.8 929,727 - LU632_RS04730 0.32 +0.2 929,780 + LU632_RS04730 0.45 +0.1 929,780 + LU632_RS04730 0.45 -0.8 929,781 - LU632_RS04730 0.45 +0.0 929,781 - LU632_RS04730 0.45 +0.9 929,783 + LU632_RS04730 0.45 +0.2 929,892 - LU632_RS04730 0.70 +0.7 929,904 - LU632_RS04730 0.73 -0.5 930,014 + -0.7 930,014 + +0.2 930,019 - +0.6 930,173 + -0.2 930,173 + +0.0 930,449 + LU632_RS04735 0.14 -0.7 930,471 - LU632_RS04735 0.16 +0.1 930,539 + LU632_RS04735 0.19 -0.9 930,573 - LU632_RS04735 0.21 +1.8 930,573 - LU632_RS04735 0.21 -0.4 930,679 - LU632_RS04735 0.26 -0.1 930,680 + LU632_RS04735 0.26 -0.0 930,680 + LU632_RS04735 0.26 -0.2 930,680 + LU632_RS04735 0.26 +0.5 930,681 - LU632_RS04735 0.26 +0.4 930,681 - LU632_RS04735 0.26 +0.7 930,704 + LU632_RS04735 0.27 +1.1 930,704 + LU632_RS04735 0.27 -0.4 930,704 + LU632_RS04735 0.27 -0.2 930,704 + LU632_RS04735 0.27 -0.7 930,705 - LU632_RS04735 0.27 +0.9 930,705 - LU632_RS04735 0.27 +2.5 930,812 + LU632_RS04735 0.32 +0.5 930,992 + LU632_RS04735 0.41 +0.0 930,992 + LU632_RS04735 0.41 +0.0
Or see this region's nucleotide sequence