Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04485 and LU632_RS04490 overlap by 4 nucleotides LU632_RS04490 and LU632_RS04495 overlap by 41 nucleotides LU632_RS04495 and LU632_RS04500 are separated by 238 nucleotides LU632_RS04500 and LU632_RS04505 are separated by 407 nucleotides
LU632_RS04485: LU632_RS04485 - SDR family oxidoreductase, at 882,853 to 883,704
_RS04485
LU632_RS04490: LU632_RS04490 - hypothetical protein, at 883,701 to 884,051
_RS04490
LU632_RS04495: LU632_RS04495 - hypothetical protein, at 884,011 to 884,283
_RS04495
LU632_RS04500: LU632_RS04500 - hypothetical protein, at 884,522 to 884,725
_RS04500
LU632_RS04505: LU632_RS04505 - H-NS histone family protein, at 885,133 to 885,585
_RS04505
Position (kb) 884
885 Strain fitness (log2 ratio) -1
0
1
2 at 883.829 kb on + strand, within LU632_RS04490 at 883.830 kb on - strand, within LU632_RS04490 at 883.833 kb on - strand, within LU632_RS04490 at 883.916 kb on - strand, within LU632_RS04490 at 883.918 kb on + strand, within LU632_RS04490 at 883.919 kb on - strand, within LU632_RS04490 at 884.088 kb on + strand, within LU632_RS04495 at 884.089 kb on - strand, within LU632_RS04495 at 884.089 kb on - strand, within LU632_RS04495 at 884.114 kb on - strand, within LU632_RS04495 at 884.122 kb on - strand, within LU632_RS04495 at 884.598 kb on + strand, within LU632_RS04500 at 884.598 kb on + strand, within LU632_RS04500 at 884.599 kb on - strand, within LU632_RS04500 at 884.599 kb on - strand, within LU632_RS04500 at 884.599 kb on - strand, within LU632_RS04500 at 884.599 kb on - strand, within LU632_RS04500 at 884.599 kb on - strand, within LU632_RS04500 at 884.699 kb on - strand, within LU632_RS04500 at 884.713 kb on + strand at 884.713 kb on + strand at 884.713 kb on + strand at 884.714 kb on + strand at 884.714 kb on - strand at 884.718 kb on + strand at 884.739 kb on + strand at 884.739 kb on + strand at 884.751 kb on + strand at 884.766 kb on + strand at 884.766 kb on + strand at 884.766 kb on + strand at 884.767 kb on - strand at 884.837 kb on + strand at 884.838 kb on - strand at 884.846 kb on + strand at 884.846 kb on + strand at 884.846 kb on + strand at 884.846 kb on + strand at 884.846 kb on + strand at 884.846 kb on + strand at 884.847 kb on - strand at 884.847 kb on - strand at 884.847 kb on - strand at 884.847 kb on - strand at 884.847 kb on - strand at 884.847 kb on - strand at 884.851 kb on - strand at 884.927 kb on - strand at 884.927 kb on - strand at 884.928 kb on + strand at 884.951 kb on - strand at 884.980 kb on - strand at 884.980 kb on - strand at 885.014 kb on + strand at 885.015 kb on - strand at 885.015 kb on - strand at 885.015 kb on - strand at 885.017 kb on + strand at 885.126 kb on + strand at 885.126 kb on + strand at 885.126 kb on + strand at 885.131 kb on + strand at 885.132 kb on - strand at 885.253 kb on - strand, within LU632_RS04505 at 885.279 kb on - strand, within LU632_RS04505 at 885.304 kb on - strand, within LU632_RS04505 at 885.310 kb on - strand, within LU632_RS04505 at 885.310 kb on - strand, within LU632_RS04505 at 885.586 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 883,829 + LU632_RS04490 0.36 +0.2 883,830 - LU632_RS04490 0.37 -0.0 883,833 - LU632_RS04490 0.38 +0.0 883,916 - LU632_RS04490 0.61 +1.9 883,918 + LU632_RS04490 0.62 +0.9 883,919 - LU632_RS04490 0.62 +0.5 884,088 + LU632_RS04495 0.28 -0.3 884,089 - LU632_RS04495 0.29 -1.1 884,089 - LU632_RS04495 0.29 -0.7 884,114 - LU632_RS04495 0.38 -0.2 884,122 - LU632_RS04495 0.41 -0.8 884,598 + LU632_RS04500 0.37 +1.1 884,598 + LU632_RS04500 0.37 -0.5 884,599 - LU632_RS04500 0.38 -0.7 884,599 - LU632_RS04500 0.38 +0.9 884,599 - LU632_RS04500 0.38 +0.7 884,599 - LU632_RS04500 0.38 +0.4 884,599 - LU632_RS04500 0.38 -0.1 884,699 - LU632_RS04500 0.87 -0.0 884,713 + -0.8 884,713 + +0.0 884,713 + -0.1 884,714 + -0.3 884,714 - -0.2 884,718 + +0.3 884,739 + +0.2 884,739 + +0.9 884,751 + +0.6 884,766 + -0.8 884,766 + -0.4 884,766 + +0.3 884,767 - -1.4 884,837 + -0.3 884,838 - +0.2 884,846 + -0.3 884,846 + -0.1 884,846 + +0.9 884,846 + +0.4 884,846 + -1.0 884,846 + -0.7 884,847 - -1.2 884,847 - +0.9 884,847 - -0.1 884,847 - +1.5 884,847 - +0.3 884,847 - +0.6 884,851 - +0.0 884,927 - +0.6 884,927 - -0.3 884,928 + +0.4 884,951 - -0.1 884,980 - +0.5 884,980 - -0.7 885,014 + +2.1 885,015 - -0.4 885,015 - +0.3 885,015 - +0.1 885,017 + -0.1 885,126 + -0.9 885,126 + +1.1 885,126 + +0.0 885,131 + +0.2 885,132 - +0.3 885,253 - LU632_RS04505 0.26 +0.1 885,279 - LU632_RS04505 0.32 -0.0 885,304 - LU632_RS04505 0.38 -0.1 885,310 - LU632_RS04505 0.39 +0.3 885,310 - LU632_RS04505 0.39 -0.9 885,586 - -0.7
Or see this region's nucleotide sequence