Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03885 and LU632_RS03890 are separated by 526 nucleotides LU632_RS03890 and LU632_RS03895 are separated by 660 nucleotides
LU632_RS03885: LU632_RS03885 - serine/threonine protein kinase, at 776,642 to 778,027
_RS03885
LU632_RS03890: LU632_RS03890 - hypothetical protein, at 778,554 to 778,820
_RS03890
LU632_RS03895: LU632_RS03895 - hypothetical protein, at 779,481 to 780,248
_RS03895
Position (kb) 778
779 Strain fitness (log2 ratio) -1
0
1 at 777.830 kb on + strand, within LU632_RS03885 at 777.830 kb on + strand, within LU632_RS03885 at 777.830 kb on + strand, within LU632_RS03885 at 777.830 kb on + strand, within LU632_RS03885 at 777.830 kb on + strand, within LU632_RS03885 at 777.830 kb on + strand, within LU632_RS03885 at 777.830 kb on + strand, within LU632_RS03885 at 777.830 kb on + strand, within LU632_RS03885 at 777.831 kb on - strand, within LU632_RS03885 at 777.831 kb on - strand, within LU632_RS03885 at 777.831 kb on - strand, within LU632_RS03885 at 777.831 kb on - strand, within LU632_RS03885 at 777.831 kb on - strand, within LU632_RS03885 at 777.831 kb on - strand, within LU632_RS03885 at 777.831 kb on - strand, within LU632_RS03885 at 777.831 kb on - strand, within LU632_RS03885 at 777.831 kb on - strand, within LU632_RS03885 at 777.899 kb on - strand at 777.982 kb on + strand at 778.055 kb on + strand at 778.056 kb on - strand at 778.056 kb on - strand at 778.080 kb on + strand at 778.127 kb on + strand at 778.127 kb on + strand at 778.128 kb on - strand at 778.146 kb on + strand at 778.146 kb on + strand at 778.149 kb on - strand at 778.149 kb on - strand at 778.277 kb on + strand at 778.278 kb on - strand at 778.278 kb on - strand at 778.289 kb on + strand at 778.353 kb on - strand at 778.409 kb on + strand at 778.409 kb on + strand at 778.409 kb on + strand at 778.410 kb on - strand at 778.413 kb on - strand at 778.413 kb on - strand at 778.552 kb on + strand at 778.567 kb on + strand at 778.568 kb on - strand at 778.568 kb on - strand at 778.782 kb on - strand, within LU632_RS03890 at 779.099 kb on - strand at 779.185 kb on - strand at 779.185 kb on - strand at 779.425 kb on - strand at 779.446 kb on + strand at 779.455 kb on + strand at 779.492 kb on + strand at 779.492 kb on + strand at 779.492 kb on + strand at 779.493 kb on - strand at 779.685 kb on + strand, within LU632_RS03895 at 779.688 kb on - strand, within LU632_RS03895 at 779.715 kb on + strand, within LU632_RS03895 at 779.717 kb on + strand, within LU632_RS03895
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 777,830 + LU632_RS03885 0.86 +0.3 777,830 + LU632_RS03885 0.86 -0.9 777,830 + LU632_RS03885 0.86 -0.5 777,830 + LU632_RS03885 0.86 -0.4 777,830 + LU632_RS03885 0.86 -0.3 777,830 + LU632_RS03885 0.86 +0.0 777,830 + LU632_RS03885 0.86 +0.2 777,830 + LU632_RS03885 0.86 +0.1 777,831 - LU632_RS03885 0.86 -0.0 777,831 - LU632_RS03885 0.86 -0.2 777,831 - LU632_RS03885 0.86 -1.1 777,831 - LU632_RS03885 0.86 +0.2 777,831 - LU632_RS03885 0.86 -0.8 777,831 - LU632_RS03885 0.86 -0.1 777,831 - LU632_RS03885 0.86 -0.2 777,831 - LU632_RS03885 0.86 -0.1 777,831 - LU632_RS03885 0.86 +0.6 777,899 - -1.1 777,982 + +0.3 778,055 + +0.2 778,056 - -0.4 778,056 - -0.8 778,080 + -0.2 778,127 + +0.4 778,127 + -0.6 778,128 - -0.1 778,146 + -0.1 778,146 + -0.3 778,149 - -0.8 778,149 - +1.5 778,277 + -0.4 778,278 - -0.1 778,278 - -0.3 778,289 + -0.5 778,353 - -0.2 778,409 + +0.2 778,409 + +0.4 778,409 + +0.9 778,410 - +0.6 778,413 - -0.2 778,413 - +0.2 778,552 + -0.2 778,567 + -0.2 778,568 - -0.2 778,568 - -0.1 778,782 - LU632_RS03890 0.85 -1.1 779,099 - -0.2 779,185 - -0.7 779,185 - +0.2 779,425 - +0.8 779,446 + -0.1 779,455 + +1.3 779,492 + +0.7 779,492 + +0.6 779,492 + -0.7 779,493 - +0.6 779,685 + LU632_RS03895 0.27 +0.1 779,688 - LU632_RS03895 0.27 -0.2 779,715 + LU632_RS03895 0.30 -0.1 779,717 + LU632_RS03895 0.31 +0.1
Or see this region's nucleotide sequence