Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03880

Experiment: HBM-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS03875 and tssH are separated by 422 nucleotidestssH and LU632_RS03885 are separated by 29 nucleotides LU632_RS03875: LU632_RS03875 - DUF4225 domain-containing protein, at 772,813 to 773,574 _RS03875 LU632_RS03880: tssH - type VI secretion system ATPase TssH, at 773,997 to 776,612 tssH LU632_RS03885: LU632_RS03885 - serine/threonine protein kinase, at 776,642 to 778,027 _RS03885 Position (kb) 773 774 775 776 777Strain fitness (log2 ratio) -2 -1 0 1 2at 773.075 kb on + strand, within LU632_RS03875at 773.076 kb on - strand, within LU632_RS03875at 773.076 kb on - strand, within LU632_RS03875at 773.081 kb on - strand, within LU632_RS03875at 773.081 kb on - strand, within LU632_RS03875at 773.145 kb on - strand, within LU632_RS03875at 773.198 kb on + strand, within LU632_RS03875at 773.272 kb on + strand, within LU632_RS03875at 773.272 kb on + strand, within LU632_RS03875at 773.273 kb on - strand, within LU632_RS03875at 773.367 kb on - strand, within LU632_RS03875at 773.367 kb on - strand, within LU632_RS03875at 773.377 kb on - strand, within LU632_RS03875at 773.399 kb on - strand, within LU632_RS03875at 773.400 kb on - strand, within LU632_RS03875at 773.401 kb on + strand, within LU632_RS03875at 773.556 kb on - strandat 773.556 kb on - strandat 773.578 kb on - strandat 773.589 kb on - strandat 773.589 kb on - strandat 773.854 kb on - strandat 773.854 kb on - strandat 774.039 kb on - strandat 774.046 kb on + strandat 774.047 kb on - strandat 774.097 kb on + strandat 774.099 kb on + strandat 774.099 kb on + strandat 774.121 kb on + strandat 774.121 kb on + strandat 774.121 kb on + strandat 774.122 kb on - strandat 774.155 kb on - strandat 774.155 kb on - strandat 774.346 kb on + strand, within tssHat 774.547 kb on - strand, within tssHat 774.632 kb on + strand, within tssHat 774.853 kb on + strand, within tssHat 774.853 kb on + strand, within tssHat 774.853 kb on + strand, within tssHat 774.854 kb on - strand, within tssHat 774.854 kb on - strand, within tssHat 775.012 kb on - strand, within tssHat 775.020 kb on + strand, within tssHat 775.178 kb on + strand, within tssHat 775.189 kb on - strand, within tssHat 775.194 kb on + strand, within tssHat 775.195 kb on - strand, within tssHat 775.723 kb on + strand, within tssHat 775.799 kb on + strand, within tssHat 775.817 kb on + strand, within tssHat 775.898 kb on + strand, within tssHat 775.911 kb on - strand, within tssHat 775.911 kb on - strand, within tssHat 775.913 kb on + strand, within tssHat 775.913 kb on + strand, within tssHat 775.913 kb on + strand, within tssHat 775.913 kb on + strand, within tssHat 775.914 kb on - strand, within tssHat 776.072 kb on - strand, within tssHat 776.311 kb on - strand, within tssHat 776.624 kb on - strandat 776.786 kb on - strand, within LU632_RS03885at 776.803 kb on + strand, within LU632_RS03885at 776.803 kb on + strand, within LU632_RS03885at 776.952 kb on + strand, within LU632_RS03885at 776.952 kb on + strand, within LU632_RS03885at 776.953 kb on - strand, within LU632_RS03885at 776.984 kb on + strand, within LU632_RS03885at 776.984 kb on + strand, within LU632_RS03885at 776.985 kb on - strand, within LU632_RS03885at 777.122 kb on + strand, within LU632_RS03885at 777.123 kb on - strand, within LU632_RS03885at 777.136 kb on + strand, within LU632_RS03885at 777.136 kb on + strand, within LU632_RS03885at 777.137 kb on - strand, within LU632_RS03885at 777.138 kb on + strand, within LU632_RS03885at 777.139 kb on - strand, within LU632_RS03885at 777.139 kb on - strand, within LU632_RS03885at 777.139 kb on - strand, within LU632_RS03885at 777.214 kb on + strand, within LU632_RS03885at 777.215 kb on - strand, within LU632_RS03885at 777.317 kb on - strand, within LU632_RS03885at 777.389 kb on - strand, within LU632_RS03885at 777.398 kb on - strand, within LU632_RS03885at 777.398 kb on - strand, within LU632_RS03885at 777.398 kb on - strand, within LU632_RS03885at 777.401 kb on + strand, within LU632_RS03885at 777.401 kb on + strand, within LU632_RS03885at 777.402 kb on - strand, within LU632_RS03885at 777.402 kb on - strand, within LU632_RS03885at 777.402 kb on - strand, within LU632_RS03885

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-Glucose
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773,075 + LU632_RS03875 0.34 +0.8
773,076 - LU632_RS03875 0.35 +0.2
773,076 - LU632_RS03875 0.35 +0.3
773,081 - LU632_RS03875 0.35 -1.2
773,081 - LU632_RS03875 0.35 -0.4
773,145 - LU632_RS03875 0.44 -1.4
773,198 + LU632_RS03875 0.51 -0.7
773,272 + LU632_RS03875 0.60 -0.5
773,272 + LU632_RS03875 0.60 -0.7
773,273 - LU632_RS03875 0.60 +0.3
773,367 - LU632_RS03875 0.73 +0.3
773,367 - LU632_RS03875 0.73 +0.3
773,377 - LU632_RS03875 0.74 +1.6
773,399 - LU632_RS03875 0.77 +0.3
773,400 - LU632_RS03875 0.77 +0.5
773,401 + LU632_RS03875 0.77 -2.1
773,556 - +0.9
773,556 - +0.3
773,578 - -0.2
773,589 - -1.4
773,589 - -0.1
773,854 - -0.3
773,854 - -1.2
774,039 - -0.1
774,046 + -0.7
774,047 - -0.9
774,097 + +0.1
774,099 + -0.0
774,099 + +0.3
774,121 + +0.9
774,121 + -1.2
774,121 + -0.3
774,122 - -0.3
774,155 - +0.1
774,155 - -0.0
774,346 + tssH LU632_RS03880 0.13 -0.1
774,547 - tssH LU632_RS03880 0.21 -0.3
774,632 + tssH LU632_RS03880 0.24 -0.2
774,853 + tssH LU632_RS03880 0.33 +0.1
774,853 + tssH LU632_RS03880 0.33 +0.4
774,853 + tssH LU632_RS03880 0.33 -0.2
774,854 - tssH LU632_RS03880 0.33 -0.3
774,854 - tssH LU632_RS03880 0.33 +0.3
775,012 - tssH LU632_RS03880 0.39 -1.3
775,020 + tssH LU632_RS03880 0.39 -0.4
775,178 + tssH LU632_RS03880 0.45 -0.1
775,189 - tssH LU632_RS03880 0.46 -0.2
775,194 + tssH LU632_RS03880 0.46 -0.5
775,195 - tssH LU632_RS03880 0.46 -0.0
775,723 + tssH LU632_RS03880 0.66 +1.3
775,799 + tssH LU632_RS03880 0.69 -0.7
775,817 + tssH LU632_RS03880 0.70 -1.4
775,898 + tssH LU632_RS03880 0.73 -0.7
775,911 - tssH LU632_RS03880 0.73 -0.3
775,911 - tssH LU632_RS03880 0.73 +0.1
775,913 + tssH LU632_RS03880 0.73 +0.7
775,913 + tssH LU632_RS03880 0.73 +2.5
775,913 + tssH LU632_RS03880 0.73 +1.3
775,913 + tssH LU632_RS03880 0.73 +0.9
775,914 - tssH LU632_RS03880 0.73 +0.4
776,072 - tssH LU632_RS03880 0.79 -0.4
776,311 - tssH LU632_RS03880 0.88 -0.8
776,624 - +0.9
776,786 - LU632_RS03885 0.10 +0.6
776,803 + LU632_RS03885 0.12 -0.4
776,803 + LU632_RS03885 0.12 +0.0
776,952 + LU632_RS03885 0.22 -1.1
776,952 + LU632_RS03885 0.22 -0.5
776,953 - LU632_RS03885 0.22 -0.0
776,984 + LU632_RS03885 0.25 +0.1
776,984 + LU632_RS03885 0.25 +0.6
776,985 - LU632_RS03885 0.25 +0.6
777,122 + LU632_RS03885 0.35 +2.5
777,123 - LU632_RS03885 0.35 -1.1
777,136 + LU632_RS03885 0.36 -0.7
777,136 + LU632_RS03885 0.36 +0.4
777,137 - LU632_RS03885 0.36 -1.5
777,138 + LU632_RS03885 0.36 +0.8
777,139 - LU632_RS03885 0.36 -0.9
777,139 - LU632_RS03885 0.36 +0.0
777,139 - LU632_RS03885 0.36 -0.0
777,214 + LU632_RS03885 0.41 -0.5
777,215 - LU632_RS03885 0.41 +0.0
777,317 - LU632_RS03885 0.49 -2.0
777,389 - LU632_RS03885 0.54 +0.3
777,398 - LU632_RS03885 0.55 +0.3
777,398 - LU632_RS03885 0.55 +0.9
777,398 - LU632_RS03885 0.55 -0.1
777,401 + LU632_RS03885 0.55 -0.1
777,401 + LU632_RS03885 0.55 +1.7
777,402 - LU632_RS03885 0.55 +0.9
777,402 - LU632_RS03885 0.55 -0.4
777,402 - LU632_RS03885 0.55 -0.1

Or see this region's nucleotide sequence