Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03425

Experiment: HBM-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS03410 and LU632_RS03415 are separated by 8 nucleotidesLU632_RS03415 and LU632_RS03420 are separated by 178 nucleotidesLU632_RS03420 and LU632_RS03425 are separated by 163 nucleotidesLU632_RS03425 and LU632_RS03430 are separated by 201 nucleotidesLU632_RS03430 and LU632_RS03435 overlap by 8 nucleotides LU632_RS03410: LU632_RS03410 - helix-turn-helix domain-containing protein, at 698,336 to 698,536 _RS03410 LU632_RS03415: LU632_RS03415 - hypothetical protein, at 698,545 to 698,988 _RS03415 LU632_RS03420: LU632_RS03420 - hypothetical protein, at 699,167 to 699,355 _RS03420 LU632_RS03425: LU632_RS03425 - hypothetical protein, at 699,519 to 699,755 _RS03425 LU632_RS03430: LU632_RS03430 - DUF4222 domain-containing protein, at 699,957 to 700,199 _RS03430 LU632_RS03435: LU632_RS03435 - TOPRIM and DUF927 domain-containing protein, at 700,192 to 702,996 _RS03435 Position (kb) 699 700Strain fitness (log2 ratio) -2 -1 0 1 2at 698.680 kb on + strand, within LU632_RS03415at 698.682 kb on + strand, within LU632_RS03415at 698.683 kb on - strand, within LU632_RS03415at 698.683 kb on - strand, within LU632_RS03415at 698.758 kb on + strand, within LU632_RS03415at 699.045 kb on + strandat 699.045 kb on + strandat 699.045 kb on + strandat 699.090 kb on + strandat 699.140 kb on + strandat 699.484 kb on + strandat 699.521 kb on - strandat 699.546 kb on - strand, within LU632_RS03425at 699.546 kb on - strand, within LU632_RS03425at 699.563 kb on - strand, within LU632_RS03425at 699.566 kb on + strand, within LU632_RS03425at 699.566 kb on + strand, within LU632_RS03425at 699.622 kb on + strand, within LU632_RS03425at 699.622 kb on + strand, within LU632_RS03425at 699.622 kb on + strand, within LU632_RS03425at 699.622 kb on + strand, within LU632_RS03425at 699.622 kb on + strand, within LU632_RS03425at 699.622 kb on + strand, within LU632_RS03425at 699.623 kb on - strand, within LU632_RS03425at 699.623 kb on - strand, within LU632_RS03425at 699.759 kb on + strandat 699.826 kb on - strandat 699.858 kb on - strandat 699.858 kb on - strandat 699.885 kb on + strandat 699.886 kb on - strandat 700.026 kb on - strand, within LU632_RS03430at 700.067 kb on + strand, within LU632_RS03430at 700.068 kb on - strand, within LU632_RS03430at 700.068 kb on - strand, within LU632_RS03430at 700.068 kb on - strand, within LU632_RS03430at 700.072 kb on + strand, within LU632_RS03430at 700.073 kb on - strand, within LU632_RS03430at 700.073 kb on - strand, within LU632_RS03430at 700.091 kb on + strand, within LU632_RS03430at 700.438 kb on - strandat 700.587 kb on + strand, within LU632_RS03435at 700.587 kb on + strand, within LU632_RS03435at 700.628 kb on - strand, within LU632_RS03435at 700.629 kb on + strand, within LU632_RS03435at 700.630 kb on - strand, within LU632_RS03435at 700.630 kb on - strand, within LU632_RS03435at 700.635 kb on - strand, within LU632_RS03435at 700.714 kb on - strand, within LU632_RS03435at 700.725 kb on - strand, within LU632_RS03435at 700.727 kb on + strand, within LU632_RS03435at 700.727 kb on + strand, within LU632_RS03435at 700.728 kb on - strand, within LU632_RS03435

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-Glucose
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698,680 + LU632_RS03415 0.30 -0.2
698,682 + LU632_RS03415 0.31 +0.0
698,683 - LU632_RS03415 0.31 +0.3
698,683 - LU632_RS03415 0.31 +0.7
698,758 + LU632_RS03415 0.48 -0.6
699,045 + -2.2
699,045 + -0.4
699,045 + +0.1
699,090 + +0.1
699,140 + +0.4
699,484 + -0.3
699,521 - +0.0
699,546 - LU632_RS03425 0.11 +0.2
699,546 - LU632_RS03425 0.11 -0.4
699,563 - LU632_RS03425 0.19 +0.8
699,566 + LU632_RS03425 0.20 -0.0
699,566 + LU632_RS03425 0.20 +0.1
699,622 + LU632_RS03425 0.43 -1.4
699,622 + LU632_RS03425 0.43 +0.8
699,622 + LU632_RS03425 0.43 +0.6
699,622 + LU632_RS03425 0.43 -0.7
699,622 + LU632_RS03425 0.43 -0.6
699,622 + LU632_RS03425 0.43 +0.1
699,623 - LU632_RS03425 0.44 -0.2
699,623 - LU632_RS03425 0.44 +0.4
699,759 + +1.3
699,826 - -1.5
699,858 - +0.3
699,858 - -0.7
699,885 + -0.4
699,886 - +2.0
700,026 - LU632_RS03430 0.28 +0.3
700,067 + LU632_RS03430 0.45 -0.6
700,068 - LU632_RS03430 0.46 -1.2
700,068 - LU632_RS03430 0.46 -1.4
700,068 - LU632_RS03430 0.46 -0.0
700,072 + LU632_RS03430 0.47 +0.1
700,073 - LU632_RS03430 0.48 -0.4
700,073 - LU632_RS03430 0.48 +1.3
700,091 + LU632_RS03430 0.55 +0.3
700,438 - -0.2
700,587 + LU632_RS03435 0.14 -0.4
700,587 + LU632_RS03435 0.14 +0.2
700,628 - LU632_RS03435 0.16 -0.2
700,629 + LU632_RS03435 0.16 -0.6
700,630 - LU632_RS03435 0.16 -1.6
700,630 - LU632_RS03435 0.16 +0.4
700,635 - LU632_RS03435 0.16 +0.1
700,714 - LU632_RS03435 0.19 +0.3
700,725 - LU632_RS03435 0.19 +0.4
700,727 + LU632_RS03435 0.19 +0.7
700,727 + LU632_RS03435 0.19 -0.7
700,728 - LU632_RS03435 0.19 +0.5

Or see this region's nucleotide sequence