Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03310 and LU632_RS03315 are separated by 172 nucleotides LU632_RS03315 and LU632_RS03320 are separated by 181 nucleotides LU632_RS03320 and LU632_RS03325 overlap by 4 nucleotides LU632_RS03325 and LU632_RS03330 are separated by 3 nucleotides
LU632_RS03310: LU632_RS03310 - sucrose-6-phosphate hydrolase, at 678,961 to 680,370
_RS03310
LU632_RS03315: LU632_RS03315 - MbeD family mobilization/exclusion protein, at 680,543 to 680,757
_RS03315
LU632_RS03320: LU632_RS03320 - hypothetical protein, at 680,939 to 681,630
_RS03320
LU632_RS03325: LU632_RS03325 - hypothetical protein, at 681,627 to 682,049
_RS03325
LU632_RS03330: LU632_RS03330 - LacI family DNA-binding transcriptional regulator, at 682,053 to 683,060
_RS03330
Position (kb) 680
681
682 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 679.957 kb on + strand, within LU632_RS03310 at 679.958 kb on - strand, within LU632_RS03310 at 680.010 kb on + strand, within LU632_RS03310 at 680.061 kb on - strand, within LU632_RS03310 at 680.086 kb on - strand, within LU632_RS03310 at 680.091 kb on + strand, within LU632_RS03310 at 680.092 kb on - strand, within LU632_RS03310 at 680.348 kb on + strand at 680.349 kb on - strand at 680.368 kb on + strand at 680.411 kb on + strand at 680.411 kb on + strand at 680.537 kb on + strand at 680.538 kb on - strand at 680.565 kb on + strand, within LU632_RS03315 at 680.565 kb on + strand, within LU632_RS03315 at 680.566 kb on - strand, within LU632_RS03315 at 680.566 kb on - strand, within LU632_RS03315 at 680.592 kb on - strand, within LU632_RS03315 at 680.597 kb on + strand, within LU632_RS03315 at 680.598 kb on - strand, within LU632_RS03315 at 680.598 kb on - strand, within LU632_RS03315 at 680.601 kb on + strand, within LU632_RS03315 at 680.602 kb on - strand, within LU632_RS03315 at 680.602 kb on - strand, within LU632_RS03315 at 680.668 kb on + strand, within LU632_RS03315 at 680.845 kb on - strand at 680.845 kb on - strand at 680.845 kb on - strand at 680.845 kb on - strand at 680.944 kb on + strand at 681.012 kb on + strand, within LU632_RS03320 at 681.108 kb on - strand, within LU632_RS03320 at 681.108 kb on - strand, within LU632_RS03320 at 681.119 kb on + strand, within LU632_RS03320 at 681.283 kb on + strand, within LU632_RS03320 at 681.283 kb on + strand, within LU632_RS03320 at 681.333 kb on - strand, within LU632_RS03320 at 681.333 kb on - strand, within LU632_RS03320 at 681.380 kb on - strand, within LU632_RS03320 at 681.428 kb on - strand, within LU632_RS03320 at 681.520 kb on - strand, within LU632_RS03320 at 681.594 kb on - strand at 681.594 kb on - strand at 681.615 kb on + strand at 681.615 kb on + strand at 681.616 kb on - strand at 681.658 kb on + strand at 681.659 kb on - strand at 681.659 kb on - strand at 681.659 kb on - strand at 681.675 kb on - strand, within LU632_RS03325 at 681.699 kb on + strand, within LU632_RS03325 at 681.700 kb on - strand, within LU632_RS03325 at 681.701 kb on + strand, within LU632_RS03325 at 681.701 kb on + strand, within LU632_RS03325 at 681.701 kb on + strand, within LU632_RS03325 at 681.702 kb on - strand, within LU632_RS03325 at 681.702 kb on - strand, within LU632_RS03325 at 681.702 kb on - strand, within LU632_RS03325 at 681.732 kb on + strand, within LU632_RS03325 at 681.732 kb on + strand, within LU632_RS03325 at 681.734 kb on + strand, within LU632_RS03325 at 681.734 kb on + strand, within LU632_RS03325 at 681.735 kb on - strand, within LU632_RS03325 at 681.735 kb on - strand, within LU632_RS03325 at 681.756 kb on + strand, within LU632_RS03325 at 681.757 kb on - strand, within LU632_RS03325 at 681.762 kb on + strand, within LU632_RS03325 at 681.763 kb on - strand, within LU632_RS03325 at 681.763 kb on - strand, within LU632_RS03325 at 681.763 kb on - strand, within LU632_RS03325 at 681.763 kb on - strand, within LU632_RS03325 at 681.778 kb on + strand, within LU632_RS03325 at 681.778 kb on + strand, within LU632_RS03325 at 681.779 kb on - strand, within LU632_RS03325 at 681.782 kb on - strand, within LU632_RS03325 at 681.782 kb on - strand, within LU632_RS03325 at 681.806 kb on + strand, within LU632_RS03325 at 681.806 kb on + strand, within LU632_RS03325 at 681.807 kb on - strand, within LU632_RS03325 at 681.807 kb on - strand, within LU632_RS03325 at 681.807 kb on - strand, within LU632_RS03325 at 681.893 kb on - strand, within LU632_RS03325 at 681.893 kb on - strand, within LU632_RS03325 at 681.893 kb on - strand, within LU632_RS03325 at 681.972 kb on - strand, within LU632_RS03325 at 681.977 kb on + strand, within LU632_RS03325 at 681.978 kb on - strand, within LU632_RS03325 at 681.986 kb on + strand, within LU632_RS03325 at 681.999 kb on + strand, within LU632_RS03325 at 681.999 kb on + strand, within LU632_RS03325 at 682.000 kb on - strand, within LU632_RS03325 at 682.005 kb on - strand, within LU632_RS03325 at 682.034 kb on - strand at 682.034 kb on - strand at 682.036 kb on - strand at 682.130 kb on - strand at 682.133 kb on + strand at 682.134 kb on - strand at 682.234 kb on + strand, within LU632_RS03330 at 682.290 kb on + strand, within LU632_RS03330 at 682.437 kb on - strand, within LU632_RS03330 at 682.454 kb on + strand, within LU632_RS03330 at 682.467 kb on + strand, within LU632_RS03330 at 682.501 kb on + strand, within LU632_RS03330 at 682.501 kb on + strand, within LU632_RS03330 at 682.502 kb on - strand, within LU632_RS03330 at 682.512 kb on + strand, within LU632_RS03330 at 682.514 kb on + strand, within LU632_RS03330 at 682.515 kb on - strand, within LU632_RS03330 at 682.524 kb on - strand, within LU632_RS03330
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 679,957 + LU632_RS03310 0.71 -0.1 679,958 - LU632_RS03310 0.71 +0.5 680,010 + LU632_RS03310 0.74 -0.3 680,061 - LU632_RS03310 0.78 -0.1 680,086 - LU632_RS03310 0.80 +1.0 680,091 + LU632_RS03310 0.80 +1.0 680,092 - LU632_RS03310 0.80 +0.2 680,348 + +0.3 680,349 - -1.6 680,368 + -0.5 680,411 + -0.6 680,411 + -0.3 680,537 + +0.8 680,538 - -0.3 680,565 + LU632_RS03315 0.10 -0.5 680,565 + LU632_RS03315 0.10 +0.0 680,566 - LU632_RS03315 0.11 -0.1 680,566 - LU632_RS03315 0.11 +0.1 680,592 - LU632_RS03315 0.23 +1.0 680,597 + LU632_RS03315 0.25 -0.3 680,598 - LU632_RS03315 0.26 -0.6 680,598 - LU632_RS03315 0.26 +0.6 680,601 + LU632_RS03315 0.27 +0.2 680,602 - LU632_RS03315 0.27 +0.2 680,602 - LU632_RS03315 0.27 +0.6 680,668 + LU632_RS03315 0.58 -0.0 680,845 - -0.1 680,845 - -0.4 680,845 - -0.4 680,845 - +1.0 680,944 + -0.3 681,012 + LU632_RS03320 0.11 +0.6 681,108 - LU632_RS03320 0.24 +2.3 681,108 - LU632_RS03320 0.24 -0.3 681,119 + LU632_RS03320 0.26 +3.3 681,283 + LU632_RS03320 0.50 +1.8 681,283 + LU632_RS03320 0.50 -0.5 681,333 - LU632_RS03320 0.57 -0.2 681,333 - LU632_RS03320 0.57 -1.2 681,380 - LU632_RS03320 0.64 -0.2 681,428 - LU632_RS03320 0.71 +0.7 681,520 - LU632_RS03320 0.84 -0.3 681,594 - -1.0 681,594 - +0.2 681,615 + +0.5 681,615 + +0.7 681,616 - -0.2 681,658 + +0.1 681,659 - -0.5 681,659 - +2.1 681,659 - +0.0 681,675 - LU632_RS03325 0.11 -1.4 681,699 + LU632_RS03325 0.17 -1.6 681,700 - LU632_RS03325 0.17 -0.3 681,701 + LU632_RS03325 0.17 -1.4 681,701 + LU632_RS03325 0.17 -0.0 681,701 + LU632_RS03325 0.17 -0.5 681,702 - LU632_RS03325 0.18 -0.0 681,702 - LU632_RS03325 0.18 -0.7 681,702 - LU632_RS03325 0.18 -0.6 681,732 + LU632_RS03325 0.25 -0.3 681,732 + LU632_RS03325 0.25 -0.0 681,734 + LU632_RS03325 0.25 -0.3 681,734 + LU632_RS03325 0.25 +0.5 681,735 - LU632_RS03325 0.26 -4.9 681,735 - LU632_RS03325 0.26 -3.8 681,756 + LU632_RS03325 0.30 +0.6 681,757 - LU632_RS03325 0.31 -3.7 681,762 + LU632_RS03325 0.32 -0.1 681,763 - LU632_RS03325 0.32 -2.2 681,763 - LU632_RS03325 0.32 -2.2 681,763 - LU632_RS03325 0.32 -2.4 681,763 - LU632_RS03325 0.32 -1.0 681,778 + LU632_RS03325 0.36 +0.5 681,778 + LU632_RS03325 0.36 -0.4 681,779 - LU632_RS03325 0.36 -2.2 681,782 - LU632_RS03325 0.37 -3.7 681,782 - LU632_RS03325 0.37 -2.7 681,806 + LU632_RS03325 0.42 -0.8 681,806 + LU632_RS03325 0.42 +0.0 681,807 - LU632_RS03325 0.43 -2.1 681,807 - LU632_RS03325 0.43 -3.0 681,807 - LU632_RS03325 0.43 -1.8 681,893 - LU632_RS03325 0.63 -3.3 681,893 - LU632_RS03325 0.63 -3.3 681,893 - LU632_RS03325 0.63 -2.6 681,972 - LU632_RS03325 0.82 -3.1 681,977 + LU632_RS03325 0.83 -0.6 681,978 - LU632_RS03325 0.83 -2.6 681,986 + LU632_RS03325 0.85 +1.0 681,999 + LU632_RS03325 0.88 +0.7 681,999 + LU632_RS03325 0.88 +0.7 682,000 - LU632_RS03325 0.88 -2.8 682,005 - LU632_RS03325 0.89 -1.0 682,034 - -1.9 682,034 - -1.8 682,036 - -2.7 682,130 - -0.6 682,133 + -4.5 682,134 - -1.8 682,234 + LU632_RS03330 0.18 +1.0 682,290 + LU632_RS03330 0.24 +1.0 682,437 - LU632_RS03330 0.38 -0.6 682,454 + LU632_RS03330 0.40 -3.5 682,467 + LU632_RS03330 0.41 -3.3 682,501 + LU632_RS03330 0.44 -3.4 682,501 + LU632_RS03330 0.44 -3.6 682,502 - LU632_RS03330 0.45 -2.4 682,512 + LU632_RS03330 0.46 -3.8 682,514 + LU632_RS03330 0.46 -2.4 682,515 - LU632_RS03330 0.46 -3.2 682,524 - LU632_RS03330 0.47 -0.6
Or see this region's nucleotide sequence