Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02445 and LU632_RS02450 are separated by 56 nucleotides LU632_RS02450 and LU632_RS02455 are separated by 53 nucleotides LU632_RS02455 and LU632_RS02460 overlap by 19 nucleotides LU632_RS02460 and LU632_RS02465 are separated by 276 nucleotides
LU632_RS02445: LU632_RS02445 - ABC transporter permease, at 487,583 to 488,419
_RS02445
LU632_RS02450: LU632_RS02450 - hypothetical protein, at 488,476 to 488,580
_RS02450
LU632_RS02455: LU632_RS02455 - DDE-type integrase/transposase/recombinase, at 488,634 to 488,976
_RS02455
LU632_RS02460: LU632_RS02460 - IS481 family transposase, at 488,958 to 489,500
_RS02460
LU632_RS02465: LU632_RS02465 - IS256 family transposase, at 489,777 to 490,985
_RS02465
Position (kb) 488
489
490 Strain fitness (log2 ratio) -2
-1
0
1 at 487.999 kb on + strand, within LU632_RS02445 at 488.000 kb on - strand, within LU632_RS02445 at 488.000 kb on - strand, within LU632_RS02445 at 488.000 kb on - strand, within LU632_RS02445 at 488.077 kb on - strand, within LU632_RS02445 at 488.077 kb on - strand, within LU632_RS02445 at 488.099 kb on - strand, within LU632_RS02445 at 488.166 kb on - strand, within LU632_RS02445 at 488.166 kb on - strand, within LU632_RS02445 at 488.206 kb on + strand, within LU632_RS02445 at 488.206 kb on + strand, within LU632_RS02445 at 488.207 kb on - strand, within LU632_RS02445 at 488.207 kb on - strand, within LU632_RS02445 at 488.207 kb on - strand, within LU632_RS02445 at 488.249 kb on + strand, within LU632_RS02445 at 488.250 kb on - strand, within LU632_RS02445 at 488.277 kb on - strand, within LU632_RS02445 at 488.277 kb on - strand, within LU632_RS02445 at 488.280 kb on + strand, within LU632_RS02445 at 488.280 kb on + strand, within LU632_RS02445 at 488.315 kb on - strand, within LU632_RS02445 at 488.315 kb on - strand, within LU632_RS02445 at 488.337 kb on + strand at 488.337 kb on + strand at 488.338 kb on - strand at 488.359 kb on - strand at 488.361 kb on + strand at 488.378 kb on - strand at 488.398 kb on + strand at 488.398 kb on + strand at 488.398 kb on + strand at 488.477 kb on + strand at 488.528 kb on + strand, within LU632_RS02450 at 488.550 kb on + strand, within LU632_RS02450 at 488.670 kb on + strand, within LU632_RS02455 at 488.681 kb on + strand, within LU632_RS02455 at 488.684 kb on + strand, within LU632_RS02455 at 488.833 kb on - strand, within LU632_RS02455 at 488.872 kb on + strand, within LU632_RS02455 at 488.872 kb on + strand, within LU632_RS02455 at 488.872 kb on + strand, within LU632_RS02455 at 488.873 kb on - strand, within LU632_RS02455 at 488.873 kb on - strand, within LU632_RS02455 at 488.873 kb on - strand, within LU632_RS02455 at 488.873 kb on - strand, within LU632_RS02455 at 488.873 kb on - strand, within LU632_RS02455 at 489.055 kb on - strand, within LU632_RS02460 at 489.055 kb on - strand, within LU632_RS02460 at 489.055 kb on - strand, within LU632_RS02460 at 489.055 kb on - strand, within LU632_RS02460 at 489.138 kb on + strand, within LU632_RS02460 at 489.247 kb on - strand, within LU632_RS02460 at 489.248 kb on + strand, within LU632_RS02460 at 489.248 kb on + strand, within LU632_RS02460 at 489.249 kb on - strand, within LU632_RS02460 at 489.285 kb on - strand, within LU632_RS02460 at 489.360 kb on + strand, within LU632_RS02460 at 489.506 kb on + strand at 489.507 kb on - strand at 489.525 kb on + strand at 489.527 kb on + strand at 489.527 kb on + strand at 489.527 kb on + strand at 489.527 kb on + strand at 489.528 kb on - strand at 489.528 kb on - strand at 489.693 kb on + strand at 489.693 kb on + strand at 489.764 kb on - strand at 490.446 kb on - strand, within LU632_RS02465
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 487,999 + LU632_RS02445 0.50 +0.2 488,000 - LU632_RS02445 0.50 +0.9 488,000 - LU632_RS02445 0.50 +1.0 488,000 - LU632_RS02445 0.50 -0.1 488,077 - LU632_RS02445 0.59 -0.0 488,077 - LU632_RS02445 0.59 +0.4 488,099 - LU632_RS02445 0.62 +0.7 488,166 - LU632_RS02445 0.70 -0.8 488,166 - LU632_RS02445 0.70 -0.5 488,206 + LU632_RS02445 0.74 +0.0 488,206 + LU632_RS02445 0.74 +0.6 488,207 - LU632_RS02445 0.75 +1.0 488,207 - LU632_RS02445 0.75 -0.5 488,207 - LU632_RS02445 0.75 +0.2 488,249 + LU632_RS02445 0.80 -0.3 488,250 - LU632_RS02445 0.80 -0.4 488,277 - LU632_RS02445 0.83 -1.1 488,277 - LU632_RS02445 0.83 -0.2 488,280 + LU632_RS02445 0.83 +0.1 488,280 + LU632_RS02445 0.83 -0.5 488,315 - LU632_RS02445 0.87 +1.0 488,315 - LU632_RS02445 0.87 -0.2 488,337 + -0.3 488,337 + -0.1 488,338 - +0.2 488,359 - +0.3 488,361 + -0.8 488,378 - +0.5 488,398 + -0.2 488,398 + -2.7 488,398 + +0.9 488,477 + +1.0 488,528 + LU632_RS02450 0.50 -0.1 488,550 + LU632_RS02450 0.70 +1.5 488,670 + LU632_RS02455 0.10 +1.0 488,681 + LU632_RS02455 0.14 -0.4 488,684 + LU632_RS02455 0.15 -0.3 488,833 - LU632_RS02455 0.58 -0.3 488,872 + LU632_RS02455 0.69 -0.6 488,872 + LU632_RS02455 0.69 +0.1 488,872 + LU632_RS02455 0.69 -0.0 488,873 - LU632_RS02455 0.70 +0.1 488,873 - LU632_RS02455 0.70 -0.2 488,873 - LU632_RS02455 0.70 -0.4 488,873 - LU632_RS02455 0.70 -1.3 488,873 - LU632_RS02455 0.70 +0.4 489,055 - LU632_RS02460 0.18 -0.1 489,055 - LU632_RS02460 0.18 -0.7 489,055 - LU632_RS02460 0.18 -1.1 489,055 - LU632_RS02460 0.18 -0.2 489,138 + LU632_RS02460 0.33 +0.7 489,247 - LU632_RS02460 0.53 +0.1 489,248 + LU632_RS02460 0.53 +1.2 489,248 + LU632_RS02460 0.53 +0.2 489,249 - LU632_RS02460 0.54 +0.4 489,285 - LU632_RS02460 0.60 -0.5 489,360 + LU632_RS02460 0.74 +0.0 489,506 + +0.3 489,507 - -0.4 489,525 + -0.8 489,527 + -0.4 489,527 + -1.8 489,527 + +0.4 489,527 + +0.2 489,528 - +0.4 489,528 - +0.3 489,693 + +0.1 489,693 + -0.2 489,764 - +0.0 490,446 - LU632_RS02465 0.55 -1.0
Or see this region's nucleotide sequence