Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01520 and LU632_RS01525 overlap by 4 nucleotides LU632_RS01525 and LU632_RS01530 are separated by 331 nucleotides LU632_RS01530 and LU632_RS01535 are separated by 72 nucleotides LU632_RS01535 and LU632_RS01540 overlap by 1 nucleotides
LU632_RS01520: LU632_RS01520 - Dam family site-specific DNA-(adenine-N6)-methyltransferase, at 307,491 to 308,333
_RS01520
LU632_RS01525: LU632_RS01525 - hypothetical protein, at 308,330 to 308,536
_RS01525
LU632_RS01530: LU632_RS01530 - hypothetical protein, at 308,868 to 309,110
_RS01530
LU632_RS01535: LU632_RS01535 - hypothetical protein, at 309,183 to 309,566
_RS01535
LU632_RS01540: LU632_RS01540 - replication endonuclease, at 309,566 to 312,061
_RS01540
Position (kb) 308
309
310 Strain fitness (log2 ratio) -2
-1
0
1 at 307.881 kb on - strand, within LU632_RS01520 at 307.881 kb on - strand, within LU632_RS01520 at 307.915 kb on - strand, within LU632_RS01520 at 308.034 kb on + strand, within LU632_RS01520 at 308.034 kb on + strand, within LU632_RS01520 at 308.212 kb on - strand, within LU632_RS01520 at 308.329 kb on + strand at 308.330 kb on - strand at 308.505 kb on - strand, within LU632_RS01525 at 308.505 kb on - strand, within LU632_RS01525 at 308.592 kb on + strand at 308.593 kb on - strand at 308.611 kb on + strand at 308.611 kb on + strand at 308.612 kb on - strand at 308.613 kb on + strand at 308.614 kb on - strand at 308.667 kb on + strand at 308.668 kb on - strand at 308.728 kb on - strand at 308.810 kb on + strand at 308.882 kb on + strand at 308.883 kb on - strand at 308.883 kb on - strand at 308.883 kb on - strand at 309.031 kb on - strand, within LU632_RS01530 at 309.051 kb on + strand, within LU632_RS01530 at 309.051 kb on + strand, within LU632_RS01530 at 309.051 kb on + strand, within LU632_RS01530 at 309.052 kb on - strand, within LU632_RS01530 at 309.052 kb on - strand, within LU632_RS01530 at 309.075 kb on - strand, within LU632_RS01530 at 309.203 kb on + strand at 309.255 kb on + strand, within LU632_RS01535 at 309.417 kb on + strand, within LU632_RS01535 at 309.418 kb on - strand, within LU632_RS01535 at 309.418 kb on - strand, within LU632_RS01535 at 309.418 kb on - strand, within LU632_RS01535 at 309.418 kb on - strand, within LU632_RS01535 at 309.564 kb on + strand at 309.564 kb on + strand at 309.565 kb on - strand at 309.671 kb on + strand at 309.671 kb on + strand at 309.674 kb on + strand at 309.675 kb on - strand at 309.675 kb on - strand at 309.675 kb on - strand at 309.683 kb on - strand at 309.749 kb on - strand at 309.749 kb on - strand at 309.773 kb on - strand at 309.838 kb on + strand, within LU632_RS01540 at 309.872 kb on + strand, within LU632_RS01540 at 310.046 kb on + strand, within LU632_RS01540 at 310.046 kb on + strand, within LU632_RS01540 at 310.047 kb on - strand, within LU632_RS01540 at 310.047 kb on - strand, within LU632_RS01540 at 310.047 kb on - strand, within LU632_RS01540
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 307,881 - LU632_RS01520 0.46 -0.9 307,881 - LU632_RS01520 0.46 -2.2 307,915 - LU632_RS01520 0.50 -0.1 308,034 + LU632_RS01520 0.64 -0.0 308,034 + LU632_RS01520 0.64 -0.4 308,212 - LU632_RS01520 0.86 +0.1 308,329 + +1.5 308,330 - -0.2 308,505 - LU632_RS01525 0.85 -0.7 308,505 - LU632_RS01525 0.85 -0.0 308,592 + +0.6 308,593 - -0.1 308,611 + -1.2 308,611 + -0.1 308,612 - +0.3 308,613 + +0.1 308,614 - +0.8 308,667 + +0.3 308,668 - -0.1 308,728 - +1.1 308,810 + +0.6 308,882 + -0.1 308,883 - +0.1 308,883 - +0.5 308,883 - +0.1 309,031 - LU632_RS01530 0.67 -1.0 309,051 + LU632_RS01530 0.75 +0.3 309,051 + LU632_RS01530 0.75 +0.1 309,051 + LU632_RS01530 0.75 +0.7 309,052 - LU632_RS01530 0.76 -1.6 309,052 - LU632_RS01530 0.76 -1.2 309,075 - LU632_RS01530 0.85 +1.4 309,203 + -0.1 309,255 + LU632_RS01535 0.19 -0.6 309,417 + LU632_RS01535 0.61 -0.1 309,418 - LU632_RS01535 0.61 +0.3 309,418 - LU632_RS01535 0.61 +1.2 309,418 - LU632_RS01535 0.61 -0.5 309,418 - LU632_RS01535 0.61 +0.6 309,564 + +0.5 309,564 + -0.2 309,565 - +1.1 309,671 + +0.2 309,671 + -0.7 309,674 + +0.3 309,675 - +0.2 309,675 - -0.1 309,675 - +0.8 309,683 - -1.0 309,749 - -0.4 309,749 - +0.5 309,773 - +0.3 309,838 + LU632_RS01540 0.11 +0.1 309,872 + LU632_RS01540 0.12 -0.1 310,046 + LU632_RS01540 0.19 -0.1 310,046 + LU632_RS01540 0.19 -1.1 310,047 - LU632_RS01540 0.19 -0.0 310,047 - LU632_RS01540 0.19 +0.7 310,047 - LU632_RS01540 0.19 +0.1
Or see this region's nucleotide sequence