Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mtnC and LU632_RS01110 overlap by 29 nucleotides LU632_RS01110 and mtnA are separated by 256 nucleotides mtnA and mtnK are separated by 151 nucleotides
LU632_RS01105: mtnC - acireductone synthase, at 236,523 to 236,964
mtnC
LU632_RS01110: LU632_RS01110 - acireductone dioxygenase, at 236,936 to 237,407
_RS01110
LU632_RS01115: mtnA - S-methyl-5-thioribose-1-phosphate isomerase, at 237,664 to 238,695
mtnA
LU632_RS01120: mtnK - S-methyl-5-thioribose kinase, at 238,847 to 240,032
mtnK
Position (kb) 237
238
239 Strain fitness (log2 ratio) -2
-1
0
1
2 at 236.675 kb on + strand, within mtnC at 236.680 kb on - strand, within mtnC at 236.699 kb on + strand, within mtnC at 236.699 kb on + strand, within mtnC at 236.700 kb on - strand, within mtnC at 236.700 kb on - strand, within mtnC at 236.700 kb on - strand, within mtnC at 236.802 kb on + strand, within mtnC at 236.803 kb on - strand, within mtnC at 236.804 kb on + strand, within mtnC at 236.804 kb on + strand, within mtnC at 236.804 kb on + strand, within mtnC at 236.805 kb on - strand, within mtnC at 236.805 kb on - strand, within mtnC at 236.805 kb on - strand, within mtnC at 236.805 kb on - strand, within mtnC at 236.844 kb on + strand, within mtnC at 236.845 kb on - strand, within mtnC at 236.849 kb on + strand, within mtnC at 236.849 kb on + strand, within mtnC at 236.850 kb on - strand, within mtnC at 237.298 kb on + strand, within LU632_RS01110 at 237.298 kb on + strand, within LU632_RS01110 at 237.298 kb on + strand, within LU632_RS01110 at 237.298 kb on + strand, within LU632_RS01110 at 237.298 kb on + strand, within LU632_RS01110 at 237.299 kb on - strand, within LU632_RS01110 at 237.302 kb on + strand, within LU632_RS01110 at 237.302 kb on + strand, within LU632_RS01110 at 237.303 kb on - strand, within LU632_RS01110 at 237.309 kb on + strand, within LU632_RS01110 at 237.309 kb on + strand, within LU632_RS01110 at 237.467 kb on - strand at 237.526 kb on + strand at 237.526 kb on + strand at 237.526 kb on + strand at 237.526 kb on + strand at 237.526 kb on + strand at 237.527 kb on - strand at 237.527 kb on - strand at 237.527 kb on - strand at 237.527 kb on - strand at 237.613 kb on - strand at 237.874 kb on - strand, within mtnA at 237.906 kb on + strand, within mtnA at 237.907 kb on - strand, within mtnA at 237.907 kb on - strand, within mtnA at 237.926 kb on + strand, within mtnA at 237.968 kb on + strand, within mtnA at 237.969 kb on - strand, within mtnA at 237.969 kb on - strand, within mtnA at 238.096 kb on - strand, within mtnA at 238.260 kb on + strand, within mtnA at 238.261 kb on - strand, within mtnA at 238.261 kb on - strand, within mtnA at 238.265 kb on - strand, within mtnA at 238.265 kb on - strand, within mtnA at 238.309 kb on - strand, within mtnA at 238.327 kb on - strand, within mtnA at 238.327 kb on - strand, within mtnA at 238.327 kb on - strand, within mtnA at 238.346 kb on - strand, within mtnA at 238.346 kb on - strand, within mtnA at 238.346 kb on - strand, within mtnA at 238.453 kb on + strand, within mtnA at 238.513 kb on + strand, within mtnA at 238.514 kb on - strand, within mtnA at 238.566 kb on + strand, within mtnA at 238.648 kb on + strand at 238.649 kb on - strand at 238.670 kb on - strand at 238.681 kb on - strand at 238.685 kb on - strand at 238.729 kb on - strand at 238.754 kb on + strand at 238.754 kb on + strand at 238.774 kb on - strand at 238.846 kb on - strand at 238.856 kb on + strand at 238.861 kb on + strand at 238.861 kb on + strand at 238.862 kb on - strand at 238.889 kb on + strand at 238.889 kb on + strand at 238.889 kb on + strand at 238.890 kb on - strand at 238.890 kb on - strand at 238.890 kb on - strand at 239.114 kb on + strand, within mtnK at 239.114 kb on + strand, within mtnK at 239.115 kb on - strand, within mtnK at 239.115 kb on - strand, within mtnK at 239.155 kb on + strand, within mtnK at 239.247 kb on + strand, within mtnK at 239.269 kb on - strand, within mtnK at 239.269 kb on - strand, within mtnK at 239.284 kb on - strand, within mtnK at 239.393 kb on + strand, within mtnK at 239.586 kb on + strand, within mtnK at 239.587 kb on - strand, within mtnK at 239.640 kb on + strand, within mtnK at 239.640 kb on + strand, within mtnK at 239.640 kb on + strand, within mtnK
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 236,675 + mtnC LU632_RS01105 0.34 -0.7 236,680 - mtnC LU632_RS01105 0.36 -0.2 236,699 + mtnC LU632_RS01105 0.40 +0.5 236,699 + mtnC LU632_RS01105 0.40 -1.1 236,700 - mtnC LU632_RS01105 0.40 -0.2 236,700 - mtnC LU632_RS01105 0.40 -0.4 236,700 - mtnC LU632_RS01105 0.40 -0.3 236,802 + mtnC LU632_RS01105 0.63 -0.1 236,803 - mtnC LU632_RS01105 0.63 +1.5 236,804 + mtnC LU632_RS01105 0.64 +1.1 236,804 + mtnC LU632_RS01105 0.64 -0.5 236,804 + mtnC LU632_RS01105 0.64 +0.3 236,805 - mtnC LU632_RS01105 0.64 -0.7 236,805 - mtnC LU632_RS01105 0.64 -0.3 236,805 - mtnC LU632_RS01105 0.64 -1.7 236,805 - mtnC LU632_RS01105 0.64 -0.5 236,844 + mtnC LU632_RS01105 0.73 -0.8 236,845 - mtnC LU632_RS01105 0.73 +0.2 236,849 + mtnC LU632_RS01105 0.74 -0.1 236,849 + mtnC LU632_RS01105 0.74 -0.1 236,850 - mtnC LU632_RS01105 0.74 +0.4 237,298 + LU632_RS01110 0.77 -0.1 237,298 + LU632_RS01110 0.77 +0.9 237,298 + LU632_RS01110 0.77 -0.5 237,298 + LU632_RS01110 0.77 -0.4 237,298 + LU632_RS01110 0.77 +0.3 237,299 - LU632_RS01110 0.77 -0.1 237,302 + LU632_RS01110 0.78 -0.3 237,302 + LU632_RS01110 0.78 -2.4 237,303 - LU632_RS01110 0.78 +0.5 237,309 + LU632_RS01110 0.79 -0.3 237,309 + LU632_RS01110 0.79 -0.0 237,467 - +1.7 237,526 + -0.3 237,526 + +0.3 237,526 + +0.3 237,526 + -0.5 237,526 + +1.1 237,527 - -0.9 237,527 - -1.0 237,527 - +0.2 237,527 - -0.5 237,613 - +0.1 237,874 - mtnA LU632_RS01115 0.20 +0.0 237,906 + mtnA LU632_RS01115 0.23 -0.5 237,907 - mtnA LU632_RS01115 0.24 +0.0 237,907 - mtnA LU632_RS01115 0.24 -0.0 237,926 + mtnA LU632_RS01115 0.25 +1.7 237,968 + mtnA LU632_RS01115 0.29 +0.3 237,969 - mtnA LU632_RS01115 0.30 +0.3 237,969 - mtnA LU632_RS01115 0.30 +2.1 238,096 - mtnA LU632_RS01115 0.42 -0.1 238,260 + mtnA LU632_RS01115 0.58 -0.8 238,261 - mtnA LU632_RS01115 0.58 -0.1 238,261 - mtnA LU632_RS01115 0.58 -0.5 238,265 - mtnA LU632_RS01115 0.58 +0.5 238,265 - mtnA LU632_RS01115 0.58 +0.7 238,309 - mtnA LU632_RS01115 0.62 -0.3 238,327 - mtnA LU632_RS01115 0.64 +0.8 238,327 - mtnA LU632_RS01115 0.64 -0.3 238,327 - mtnA LU632_RS01115 0.64 -1.2 238,346 - mtnA LU632_RS01115 0.66 +0.6 238,346 - mtnA LU632_RS01115 0.66 -0.2 238,346 - mtnA LU632_RS01115 0.66 -0.4 238,453 + mtnA LU632_RS01115 0.76 -0.1 238,513 + mtnA LU632_RS01115 0.82 +0.0 238,514 - mtnA LU632_RS01115 0.82 -0.4 238,566 + mtnA LU632_RS01115 0.87 -1.6 238,648 + +0.5 238,649 - +0.8 238,670 - +0.5 238,681 - +0.1 238,685 - +0.4 238,729 - +0.7 238,754 + -1.3 238,754 + +0.0 238,774 - +0.0 238,846 - -0.5 238,856 + +1.3 238,861 + +0.1 238,861 + +0.1 238,862 - -0.4 238,889 + +1.1 238,889 + -0.1 238,889 + +0.1 238,890 - +1.1 238,890 - -0.5 238,890 - -0.0 239,114 + mtnK LU632_RS01120 0.23 +1.0 239,114 + mtnK LU632_RS01120 0.23 -0.2 239,115 - mtnK LU632_RS01120 0.23 -0.4 239,115 - mtnK LU632_RS01120 0.23 -0.0 239,155 + mtnK LU632_RS01120 0.26 -0.0 239,247 + mtnK LU632_RS01120 0.34 -1.2 239,269 - mtnK LU632_RS01120 0.36 +0.4 239,269 - mtnK LU632_RS01120 0.36 -0.0 239,284 - mtnK LU632_RS01120 0.37 -0.1 239,393 + mtnK LU632_RS01120 0.46 +0.5 239,586 + mtnK LU632_RS01120 0.62 -0.3 239,587 - mtnK LU632_RS01120 0.62 -0.1 239,640 + mtnK LU632_RS01120 0.67 +1.7 239,640 + mtnK LU632_RS01120 0.67 -0.8 239,640 + mtnK LU632_RS01120 0.67 +0.5
Or see this region's nucleotide sequence