Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tssH and LU632_RS00690 are separated by 74 nucleotides LU632_RS00690 and LU632_RS00695 are separated by 159 nucleotides LU632_RS00695 and LU632_RS00700 are separated by 106 nucleotides
LU632_RS00685: tssH - type VI secretion system ATPase TssH, at 142,576 to 145,266
tssH
LU632_RS00690: LU632_RS00690 - type 1 fimbrial protein, at 145,341 to 145,892
_RS00690
LU632_RS00695: LU632_RS00695 - fimbria/pilus periplasmic chaperone, at 146,052 to 146,798
_RS00695
LU632_RS00700: LU632_RS00700 - fimbrial biogenesis outer membrane usher protein, at 146,905 to 149,541
_RS00700
Position (kb) 146
147 Strain fitness (log2 ratio) -2
-1
0
1 at 145.060 kb on - strand at 145.149 kb on + strand at 145.149 kb on + strand at 145.222 kb on - strand at 145.233 kb on + strand at 145.314 kb on + strand at 145.357 kb on + strand at 145.363 kb on + strand at 145.363 kb on + strand at 145.478 kb on + strand, within LU632_RS00690 at 145.643 kb on + strand, within LU632_RS00690 at 145.674 kb on + strand, within LU632_RS00690 at 145.674 kb on + strand, within LU632_RS00690 at 145.700 kb on + strand, within LU632_RS00690 at 145.799 kb on + strand, within LU632_RS00690 at 145.799 kb on + strand, within LU632_RS00690 at 145.800 kb on - strand, within LU632_RS00690 at 145.800 kb on - strand, within LU632_RS00690 at 145.822 kb on - strand, within LU632_RS00690 at 145.822 kb on - strand, within LU632_RS00690 at 145.874 kb on + strand at 145.874 kb on + strand at 145.875 kb on - strand at 145.875 kb on - strand at 145.875 kb on - strand at 145.876 kb on - strand at 145.903 kb on - strand at 145.913 kb on + strand at 145.963 kb on + strand at 145.964 kb on - strand at 145.967 kb on + strand at 145.968 kb on - strand at 145.968 kb on - strand at 145.968 kb on - strand at 145.968 kb on - strand at 145.968 kb on - strand at 146.052 kb on - strand at 146.089 kb on + strand at 146.089 kb on + strand at 146.253 kb on - strand, within LU632_RS00695 at 146.833 kb on - strand at 146.909 kb on - strand at 146.941 kb on - strand at 147.008 kb on + strand at 147.008 kb on + strand at 147.041 kb on + strand at 147.183 kb on + strand, within LU632_RS00700 at 147.263 kb on - strand, within LU632_RS00700 at 147.289 kb on - strand, within LU632_RS00700 at 147.293 kb on + strand, within LU632_RS00700 at 147.298 kb on - strand, within LU632_RS00700 at 147.368 kb on + strand, within LU632_RS00700 at 147.375 kb on + strand, within LU632_RS00700 at 147.376 kb on - strand, within LU632_RS00700 at 147.430 kb on - strand, within LU632_RS00700 at 147.470 kb on - strand, within LU632_RS00700 at 147.520 kb on + strand, within LU632_RS00700 at 147.520 kb on + strand, within LU632_RS00700 at 147.521 kb on - strand, within LU632_RS00700 at 147.521 kb on - strand, within LU632_RS00700 at 147.522 kb on + strand, within LU632_RS00700 at 147.523 kb on - strand, within LU632_RS00700 at 147.523 kb on - strand, within LU632_RS00700 at 147.525 kb on + strand, within LU632_RS00700 at 147.526 kb on - strand, within LU632_RS00700 at 147.535 kb on + strand, within LU632_RS00700 at 147.536 kb on - strand, within LU632_RS00700 at 147.682 kb on - strand, within LU632_RS00700 at 147.682 kb on - strand, within LU632_RS00700 at 147.717 kb on + strand, within LU632_RS00700 at 147.718 kb on - strand, within LU632_RS00700 at 147.754 kb on - strand, within LU632_RS00700 at 147.782 kb on - strand, within LU632_RS00700 at 147.788 kb on + strand, within LU632_RS00700 at 147.789 kb on - strand, within LU632_RS00700
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 145,060 - +0.0 145,149 + +0.0 145,149 + -0.0 145,222 - +0.2 145,233 + -0.4 145,314 + -0.4 145,357 + -1.5 145,363 + -0.3 145,363 + -0.8 145,478 + LU632_RS00690 0.25 +0.6 145,643 + LU632_RS00690 0.55 -0.4 145,674 + LU632_RS00690 0.60 +1.1 145,674 + LU632_RS00690 0.60 +1.2 145,700 + LU632_RS00690 0.65 +0.2 145,799 + LU632_RS00690 0.83 -1.2 145,799 + LU632_RS00690 0.83 +0.3 145,800 - LU632_RS00690 0.83 -0.0 145,800 - LU632_RS00690 0.83 +0.2 145,822 - LU632_RS00690 0.87 +0.6 145,822 - LU632_RS00690 0.87 -0.3 145,874 + -0.5 145,874 + -0.8 145,875 - -0.5 145,875 - +0.4 145,875 - +0.2 145,876 - -0.1 145,903 - +0.3 145,913 + -0.5 145,963 + -0.6 145,964 - +0.6 145,967 + -1.0 145,968 - +0.8 145,968 - -0.3 145,968 - +0.3 145,968 - +0.2 145,968 - -0.5 146,052 - -0.2 146,089 + -0.0 146,089 + +0.8 146,253 - LU632_RS00695 0.27 -0.6 146,833 - +0.1 146,909 - +0.7 146,941 - +0.2 147,008 + +0.2 147,008 + +0.5 147,041 + +0.5 147,183 + LU632_RS00700 0.11 +0.1 147,263 - LU632_RS00700 0.14 -0.2 147,289 - LU632_RS00700 0.15 -0.2 147,293 + LU632_RS00700 0.15 +0.4 147,298 - LU632_RS00700 0.15 +0.0 147,368 + LU632_RS00700 0.18 +0.1 147,375 + LU632_RS00700 0.18 -1.2 147,376 - LU632_RS00700 0.18 +0.6 147,430 - LU632_RS00700 0.20 +0.6 147,470 - LU632_RS00700 0.21 -0.4 147,520 + LU632_RS00700 0.23 -0.1 147,520 + LU632_RS00700 0.23 +0.2 147,521 - LU632_RS00700 0.23 -0.5 147,521 - LU632_RS00700 0.23 +0.7 147,522 + LU632_RS00700 0.23 +0.1 147,523 - LU632_RS00700 0.23 +0.4 147,523 - LU632_RS00700 0.23 +1.1 147,525 + LU632_RS00700 0.24 +0.3 147,526 - LU632_RS00700 0.24 +0.7 147,535 + LU632_RS00700 0.24 -0.9 147,536 - LU632_RS00700 0.24 +0.2 147,682 - LU632_RS00700 0.29 -0.9 147,682 - LU632_RS00700 0.29 -0.2 147,717 + LU632_RS00700 0.31 -0.7 147,718 - LU632_RS00700 0.31 -0.2 147,754 - LU632_RS00700 0.32 -0.3 147,782 - LU632_RS00700 0.33 -0.0 147,788 + LU632_RS00700 0.33 -1.9 147,789 - LU632_RS00700 0.34 -0.0
Or see this region's nucleotide sequence