Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00265 and dppB are separated by 212 nucleotides dppB and dppC are separated by 10 nucleotides dppC and dppD are separated by 9 nucleotides
LU632_RS00265: LU632_RS00265 - ABC transporter substrate-binding protein, at 52,705 to 54,315
_RS00265
LU632_RS00270: dppB - dipeptide ABC transporter permease DppB, at 54,528 to 55,547
dppB
LU632_RS00275: dppC - dipeptide ABC transporter permease DppC, at 55,558 to 56,460
dppC
LU632_RS00280: dppD - dipeptide ABC transporter ATP-binding protein, at 56,470 to 57,456
dppD
Position (kb) 54
55
56 Strain fitness (log2 ratio) -2
-1
0
1
2 at 53.541 kb on + strand, within LU632_RS00265 at 53.542 kb on - strand, within LU632_RS00265 at 53.599 kb on - strand, within LU632_RS00265 at 53.684 kb on - strand, within LU632_RS00265 at 53.724 kb on + strand, within LU632_RS00265 at 53.738 kb on - strand, within LU632_RS00265 at 53.740 kb on - strand, within LU632_RS00265 at 53.764 kb on + strand, within LU632_RS00265 at 53.821 kb on - strand, within LU632_RS00265 at 53.858 kb on - strand, within LU632_RS00265 at 53.858 kb on - strand, within LU632_RS00265 at 53.858 kb on - strand, within LU632_RS00265 at 53.877 kb on + strand, within LU632_RS00265 at 53.938 kb on + strand, within LU632_RS00265 at 54.079 kb on + strand, within LU632_RS00265 at 54.079 kb on + strand, within LU632_RS00265 at 54.094 kb on + strand, within LU632_RS00265 at 54.095 kb on - strand, within LU632_RS00265 at 54.160 kb on + strand at 54.161 kb on - strand at 54.161 kb on - strand at 54.161 kb on - strand at 54.163 kb on + strand at 54.163 kb on + strand at 54.164 kb on - strand at 54.164 kb on - strand at 54.207 kb on - strand at 54.279 kb on + strand at 54.279 kb on + strand at 54.306 kb on + strand at 54.314 kb on - strand at 54.479 kb on + strand at 54.480 kb on - strand at 54.527 kb on + strand at 54.527 kb on + strand at 54.541 kb on + strand at 54.542 kb on - strand at 54.576 kb on - strand at 54.582 kb on - strand at 54.589 kb on + strand at 54.589 kb on + strand at 54.611 kb on + strand at 54.723 kb on + strand, within dppB at 54.724 kb on - strand, within dppB at 54.724 kb on - strand, within dppB at 54.724 kb on - strand, within dppB at 54.725 kb on + strand, within dppB at 54.725 kb on + strand, within dppB at 54.725 kb on + strand, within dppB at 54.725 kb on + strand, within dppB at 54.726 kb on - strand, within dppB at 54.726 kb on - strand, within dppB at 54.764 kb on + strand, within dppB at 54.765 kb on - strand, within dppB at 54.816 kb on - strand, within dppB at 54.932 kb on + strand, within dppB at 54.987 kb on - strand, within dppB at 54.987 kb on - strand, within dppB at 55.046 kb on - strand, within dppB at 55.092 kb on - strand, within dppB at 55.233 kb on + strand, within dppB at 55.234 kb on - strand, within dppB at 55.234 kb on - strand, within dppB at 55.234 kb on - strand, within dppB at 55.235 kb on + strand, within dppB at 55.236 kb on - strand, within dppB at 55.236 kb on - strand, within dppB at 55.298 kb on + strand, within dppB at 55.298 kb on + strand, within dppB at 55.445 kb on - strand, within dppB at 55.445 kb on - strand, within dppB at 55.479 kb on - strand at 55.509 kb on + strand at 55.630 kb on + strand at 55.631 kb on - strand at 55.644 kb on + strand at 55.670 kb on - strand, within dppC at 55.751 kb on + strand, within dppC at 55.795 kb on - strand, within dppC at 55.843 kb on + strand, within dppC at 55.843 kb on + strand, within dppC at 55.843 kb on + strand, within dppC at 55.843 kb on + strand, within dppC at 55.844 kb on - strand, within dppC at 56.001 kb on - strand, within dppC at 56.040 kb on + strand, within dppC at 56.041 kb on - strand, within dppC at 56.041 kb on - strand, within dppC at 56.083 kb on + strand, within dppC at 56.083 kb on + strand, within dppC at 56.131 kb on + strand, within dppC at 56.131 kb on + strand, within dppC at 56.427 kb on - strand at 56.480 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 53,541 + LU632_RS00265 0.52 -2.4 53,542 - LU632_RS00265 0.52 +0.5 53,599 - LU632_RS00265 0.55 -2.1 53,684 - LU632_RS00265 0.61 +0.5 53,724 + LU632_RS00265 0.63 +0.0 53,738 - LU632_RS00265 0.64 -0.6 53,740 - LU632_RS00265 0.64 +0.4 53,764 + LU632_RS00265 0.66 -0.4 53,821 - LU632_RS00265 0.69 +0.8 53,858 - LU632_RS00265 0.72 -1.7 53,858 - LU632_RS00265 0.72 -1.5 53,858 - LU632_RS00265 0.72 +0.3 53,877 + LU632_RS00265 0.73 -0.4 53,938 + LU632_RS00265 0.77 +0.2 54,079 + LU632_RS00265 0.85 -0.5 54,079 + LU632_RS00265 0.85 +0.1 54,094 + LU632_RS00265 0.86 -0.2 54,095 - LU632_RS00265 0.86 -0.1 54,160 + +0.0 54,161 - +2.3 54,161 - -0.3 54,161 - -0.0 54,163 + -0.2 54,163 + +0.4 54,164 - +0.5 54,164 - -0.2 54,207 - -1.0 54,279 + -0.3 54,279 + +1.9 54,306 + -0.3 54,314 - -0.2 54,479 + -0.8 54,480 - -1.2 54,527 + +0.1 54,527 + -0.3 54,541 + -0.7 54,542 - +1.1 54,576 - -0.4 54,582 - -1.0 54,589 + +0.1 54,589 + -0.8 54,611 + -0.1 54,723 + dppB LU632_RS00270 0.19 -0.3 54,724 - dppB LU632_RS00270 0.19 +0.5 54,724 - dppB LU632_RS00270 0.19 -0.7 54,724 - dppB LU632_RS00270 0.19 -1.1 54,725 + dppB LU632_RS00270 0.19 -0.5 54,725 + dppB LU632_RS00270 0.19 -0.2 54,725 + dppB LU632_RS00270 0.19 +1.1 54,725 + dppB LU632_RS00270 0.19 +0.1 54,726 - dppB LU632_RS00270 0.19 -0.1 54,726 - dppB LU632_RS00270 0.19 -0.2 54,764 + dppB LU632_RS00270 0.23 +0.5 54,765 - dppB LU632_RS00270 0.23 -0.3 54,816 - dppB LU632_RS00270 0.28 +0.3 54,932 + dppB LU632_RS00270 0.40 +0.5 54,987 - dppB LU632_RS00270 0.45 -1.1 54,987 - dppB LU632_RS00270 0.45 +0.9 55,046 - dppB LU632_RS00270 0.51 +2.5 55,092 - dppB LU632_RS00270 0.55 -0.1 55,233 + dppB LU632_RS00270 0.69 +0.5 55,234 - dppB LU632_RS00270 0.69 -0.2 55,234 - dppB LU632_RS00270 0.69 +1.3 55,234 - dppB LU632_RS00270 0.69 -0.2 55,235 + dppB LU632_RS00270 0.69 +0.2 55,236 - dppB LU632_RS00270 0.69 +0.1 55,236 - dppB LU632_RS00270 0.69 -0.5 55,298 + dppB LU632_RS00270 0.75 -1.5 55,298 + dppB LU632_RS00270 0.75 +0.2 55,445 - dppB LU632_RS00270 0.90 -2.1 55,445 - dppB LU632_RS00270 0.90 -0.1 55,479 - -0.1 55,509 + +0.1 55,630 + -0.2 55,631 - +0.2 55,644 + -1.2 55,670 - dppC LU632_RS00275 0.12 -1.1 55,751 + dppC LU632_RS00275 0.21 -0.1 55,795 - dppC LU632_RS00275 0.26 -0.1 55,843 + dppC LU632_RS00275 0.32 -2.5 55,843 + dppC LU632_RS00275 0.32 -0.4 55,843 + dppC LU632_RS00275 0.32 -0.1 55,843 + dppC LU632_RS00275 0.32 +2.1 55,844 - dppC LU632_RS00275 0.32 +0.1 56,001 - dppC LU632_RS00275 0.49 +1.1 56,040 + dppC LU632_RS00275 0.53 +0.4 56,041 - dppC LU632_RS00275 0.53 -0.2 56,041 - dppC LU632_RS00275 0.53 -0.2 56,083 + dppC LU632_RS00275 0.58 +0.3 56,083 + dppC LU632_RS00275 0.58 +0.6 56,131 + dppC LU632_RS00275 0.63 +0.2 56,131 + dppC LU632_RS00275 0.63 -0.4 56,427 - -0.2 56,480 + -0.6
Or see this region's nucleotide sequence