Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt eptB and cirA are separated by 94 nucleotides cirA and LU632_RS00255 are separated by 47 nucleotides
LU632_RS00245: eptB - 'kdo(2)-lipid A phosphoethanolamine 7''-transferase' pseudo=_no_value transl_table=11, at 46,214 to 47,913
eptB
LU632_RS00250: cirA - catecholate siderophore receptor CirA, at 48,008 to 49,969
cirA
LU632_RS00255: LU632_RS00255 - ABC transporter substrate-binding protein, at 50,017 to 51,168
_RS00255
Position (kb) 48
49
50 Strain fitness (log2 ratio) -1
0
1
2 at 47.034 kb on + strand, within eptB at 47.034 kb on + strand, within eptB at 47.035 kb on - strand, within eptB at 47.035 kb on - strand, within eptB at 47.035 kb on - strand, within eptB at 47.112 kb on + strand, within eptB at 47.112 kb on + strand, within eptB at 47.112 kb on + strand, within eptB at 47.113 kb on - strand, within eptB at 47.160 kb on - strand, within eptB at 47.202 kb on + strand, within eptB at 47.242 kb on + strand, within eptB at 47.266 kb on + strand, within eptB at 47.267 kb on - strand, within eptB at 47.285 kb on + strand, within eptB at 47.285 kb on + strand, within eptB at 47.325 kb on + strand, within eptB at 47.413 kb on + strand, within eptB at 47.413 kb on + strand, within eptB at 47.414 kb on - strand, within eptB at 47.414 kb on - strand, within eptB at 47.443 kb on + strand, within eptB at 47.517 kb on + strand, within eptB at 47.518 kb on - strand, within eptB at 47.531 kb on - strand, within eptB at 47.575 kb on - strand, within eptB at 47.644 kb on - strand, within eptB at 47.706 kb on + strand, within eptB at 47.710 kb on + strand, within eptB at 47.711 kb on - strand, within eptB at 47.805 kb on + strand at 47.806 kb on - strand at 47.806 kb on - strand at 47.806 kb on - strand at 47.824 kb on + strand at 47.825 kb on - strand at 47.826 kb on + strand at 47.827 kb on - strand at 47.833 kb on - strand at 47.833 kb on - strand at 47.947 kb on + strand at 48.064 kb on - strand at 48.064 kb on - strand at 48.164 kb on - strand at 48.216 kb on + strand, within cirA at 48.216 kb on + strand, within cirA at 48.307 kb on + strand, within cirA at 48.342 kb on + strand, within cirA at 48.343 kb on - strand, within cirA at 48.343 kb on - strand, within cirA at 48.347 kb on - strand, within cirA at 48.348 kb on + strand, within cirA at 48.349 kb on - strand, within cirA at 48.432 kb on + strand, within cirA at 48.432 kb on + strand, within cirA at 48.432 kb on + strand, within cirA at 48.432 kb on + strand, within cirA at 48.433 kb on - strand, within cirA at 48.433 kb on - strand, within cirA at 48.591 kb on + strand, within cirA at 48.591 kb on + strand, within cirA at 48.652 kb on + strand, within cirA at 48.801 kb on + strand, within cirA at 48.982 kb on - strand, within cirA at 49.087 kb on + strand, within cirA at 49.087 kb on + strand, within cirA at 49.087 kb on + strand, within cirA at 49.087 kb on + strand, within cirA at 49.126 kb on - strand, within cirA at 49.154 kb on + strand, within cirA at 49.355 kb on + strand, within cirA at 49.484 kb on - strand, within cirA at 49.544 kb on + strand, within cirA at 49.552 kb on + strand, within cirA at 49.654 kb on + strand, within cirA at 49.951 kb on + strand at 49.988 kb on - strand at 50.019 kb on - strand at 50.065 kb on - strand at 50.067 kb on - strand at 50.067 kb on - strand at 50.154 kb on + strand, within LU632_RS00255 at 50.154 kb on + strand, within LU632_RS00255 at 50.154 kb on + strand, within LU632_RS00255 at 50.155 kb on - strand, within LU632_RS00255 at 50.155 kb on - strand, within LU632_RS00255 at 50.171 kb on + strand, within LU632_RS00255 at 50.172 kb on - strand, within LU632_RS00255 at 50.175 kb on + strand, within LU632_RS00255 at 50.605 kb on - strand, within LU632_RS00255 at 50.607 kb on - strand, within LU632_RS00255 at 50.607 kb on - strand, within LU632_RS00255 at 50.686 kb on - strand, within LU632_RS00255 at 50.771 kb on - strand, within LU632_RS00255 at 50.771 kb on - strand, within LU632_RS00255 at 50.864 kb on - strand, within LU632_RS00255
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 47,034 + eptB LU632_RS00245 0.48 -0.1 47,034 + eptB LU632_RS00245 0.48 +0.5 47,035 - eptB LU632_RS00245 0.48 -0.4 47,035 - eptB LU632_RS00245 0.48 +0.3 47,035 - eptB LU632_RS00245 0.48 -0.7 47,112 + eptB LU632_RS00245 0.53 -0.9 47,112 + eptB LU632_RS00245 0.53 +0.9 47,112 + eptB LU632_RS00245 0.53 -0.7 47,113 - eptB LU632_RS00245 0.53 -0.1 47,160 - eptB LU632_RS00245 0.56 -0.9 47,202 + eptB LU632_RS00245 0.58 -0.0 47,242 + eptB LU632_RS00245 0.60 -0.4 47,266 + eptB LU632_RS00245 0.62 -0.1 47,267 - eptB LU632_RS00245 0.62 +0.2 47,285 + eptB LU632_RS00245 0.63 +0.1 47,285 + eptB LU632_RS00245 0.63 +0.7 47,325 + eptB LU632_RS00245 0.65 +0.5 47,413 + eptB LU632_RS00245 0.71 +0.7 47,413 + eptB LU632_RS00245 0.71 -0.1 47,414 - eptB LU632_RS00245 0.71 +0.3 47,414 - eptB LU632_RS00245 0.71 +0.3 47,443 + eptB LU632_RS00245 0.72 +1.4 47,517 + eptB LU632_RS00245 0.77 +0.1 47,518 - eptB LU632_RS00245 0.77 -0.1 47,531 - eptB LU632_RS00245 0.77 -0.3 47,575 - eptB LU632_RS00245 0.80 +0.2 47,644 - eptB LU632_RS00245 0.84 -0.3 47,706 + eptB LU632_RS00245 0.88 -0.1 47,710 + eptB LU632_RS00245 0.88 -0.7 47,711 - eptB LU632_RS00245 0.88 -0.5 47,805 + -0.7 47,806 - +0.5 47,806 - -0.7 47,806 - -0.1 47,824 + -0.7 47,825 - +0.8 47,826 + -0.2 47,827 - -0.5 47,833 - +0.2 47,833 - -0.7 47,947 + -0.1 48,064 - +0.3 48,064 - +0.8 48,164 - +0.7 48,216 + cirA LU632_RS00250 0.11 +0.1 48,216 + cirA LU632_RS00250 0.11 -0.1 48,307 + cirA LU632_RS00250 0.15 +0.5 48,342 + cirA LU632_RS00250 0.17 +0.0 48,343 - cirA LU632_RS00250 0.17 +0.4 48,343 - cirA LU632_RS00250 0.17 +1.1 48,347 - cirA LU632_RS00250 0.17 -1.5 48,348 + cirA LU632_RS00250 0.17 -0.1 48,349 - cirA LU632_RS00250 0.17 -0.5 48,432 + cirA LU632_RS00250 0.22 +0.0 48,432 + cirA LU632_RS00250 0.22 +0.6 48,432 + cirA LU632_RS00250 0.22 +0.3 48,432 + cirA LU632_RS00250 0.22 -0.2 48,433 - cirA LU632_RS00250 0.22 -0.7 48,433 - cirA LU632_RS00250 0.22 +1.8 48,591 + cirA LU632_RS00250 0.30 +0.1 48,591 + cirA LU632_RS00250 0.30 -0.3 48,652 + cirA LU632_RS00250 0.33 -1.4 48,801 + cirA LU632_RS00250 0.40 -0.8 48,982 - cirA LU632_RS00250 0.50 -0.5 49,087 + cirA LU632_RS00250 0.55 -1.1 49,087 + cirA LU632_RS00250 0.55 +0.7 49,087 + cirA LU632_RS00250 0.55 +0.1 49,087 + cirA LU632_RS00250 0.55 +0.0 49,126 - cirA LU632_RS00250 0.57 +0.3 49,154 + cirA LU632_RS00250 0.58 -0.6 49,355 + cirA LU632_RS00250 0.69 -0.2 49,484 - cirA LU632_RS00250 0.75 +0.6 49,544 + cirA LU632_RS00250 0.78 +0.4 49,552 + cirA LU632_RS00250 0.79 -0.4 49,654 + cirA LU632_RS00250 0.84 +0.1 49,951 + -0.0 49,988 - -0.4 50,019 - +0.4 50,065 - +2.1 50,067 - +0.2 50,067 - -0.5 50,154 + LU632_RS00255 0.12 +0.6 50,154 + LU632_RS00255 0.12 -0.1 50,154 + LU632_RS00255 0.12 -0.5 50,155 - LU632_RS00255 0.12 -0.1 50,155 - LU632_RS00255 0.12 -0.0 50,171 + LU632_RS00255 0.13 +0.4 50,172 - LU632_RS00255 0.13 +1.4 50,175 + LU632_RS00255 0.14 +0.2 50,605 - LU632_RS00255 0.51 +0.1 50,607 - LU632_RS00255 0.51 -0.2 50,607 - LU632_RS00255 0.51 -0.7 50,686 - LU632_RS00255 0.58 -0.9 50,771 - LU632_RS00255 0.65 -0.1 50,771 - LU632_RS00255 0.65 +1.1 50,864 - LU632_RS00255 0.74 +0.1
Or see this region's nucleotide sequence