Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00150 and LU632_RS00155 are separated by 451 nucleotides LU632_RS00155 and LU632_RS00160 are separated by 34 nucleotides LU632_RS00160 and LU632_RS00165 are separated by 39 nucleotides LU632_RS00165 and LU632_RS00170 are separated by 91 nucleotides
LU632_RS00150: LU632_RS00150 - PTS mannitol transporter subunit IICBA, at 27,685 to 29,604
_RS00150
LU632_RS00155: LU632_RS00155 - DUF943 family protein, at 30,056 to 30,429
_RS00155
LU632_RS00160: LU632_RS00160 - IS5 family transposase, at 30,464 to 31,239
_RS00160
LU632_RS00165: LU632_RS00165 - IS6 family transposase, at 31,279 to 31,968
_RS00165
LU632_RS00170: LU632_RS00170 - hypothetical protein, at 32,060 to 32,641
_RS00170
Position (kb) 30
31
32 Strain fitness (log2 ratio) -1
0
1
2 at 29.490 kb on + strand at 29.589 kb on + strand at 29.604 kb on + strand at 29.638 kb on + strand at 29.638 kb on + strand at 29.639 kb on - strand at 29.639 kb on - strand at 29.639 kb on - strand at 29.663 kb on - strand at 29.691 kb on + strand at 29.699 kb on + strand at 29.700 kb on - strand at 29.825 kb on + strand at 29.826 kb on - strand at 29.970 kb on + strand at 30.015 kb on + strand at 30.115 kb on - strand, within LU632_RS00155 at 30.193 kb on + strand, within LU632_RS00155 at 30.194 kb on - strand, within LU632_RS00155 at 30.200 kb on - strand, within LU632_RS00155 at 30.200 kb on - strand, within LU632_RS00155 at 30.200 kb on - strand, within LU632_RS00155 at 30.307 kb on - strand, within LU632_RS00155 at 30.317 kb on - strand, within LU632_RS00155 at 30.341 kb on + strand, within LU632_RS00155 at 30.341 kb on + strand, within LU632_RS00155 at 30.346 kb on + strand, within LU632_RS00155 at 30.476 kb on - strand at 31.462 kb on + strand, within LU632_RS00165 at 31.462 kb on + strand, within LU632_RS00165 at 31.695 kb on - strand, within LU632_RS00165 at 32.012 kb on + strand at 32.013 kb on - strand at 32.018 kb on + strand at 32.018 kb on + strand at 32.028 kb on + strand at 32.029 kb on - strand at 32.029 kb on - strand at 32.036 kb on + strand at 32.036 kb on + strand at 32.037 kb on - strand at 32.037 kb on - strand at 32.037 kb on - strand at 32.037 kb on - strand at 32.040 kb on + strand at 32.041 kb on - strand at 32.041 kb on - strand at 32.068 kb on + strand at 32.068 kb on + strand at 32.203 kb on + strand, within LU632_RS00170 at 32.203 kb on + strand, within LU632_RS00170 at 32.204 kb on - strand, within LU632_RS00170 at 32.206 kb on + strand, within LU632_RS00170 at 32.206 kb on + strand, within LU632_RS00170 at 32.206 kb on + strand, within LU632_RS00170 at 32.207 kb on - strand, within LU632_RS00170 at 32.207 kb on - strand, within LU632_RS00170 at 32.207 kb on - strand, within LU632_RS00170 at 32.207 kb on - strand, within LU632_RS00170 at 32.209 kb on - strand, within LU632_RS00170
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 29,490 + +1.1 29,589 + -0.2 29,604 + +1.1 29,638 + +1.4 29,638 + +0.7 29,639 - +0.1 29,639 - +0.1 29,639 - -0.2 29,663 - -0.1 29,691 + +2.1 29,699 + -0.5 29,700 - +0.2 29,825 + -0.7 29,826 - +0.8 29,970 + +0.2 30,015 + -0.1 30,115 - LU632_RS00155 0.16 +0.0 30,193 + LU632_RS00155 0.37 -0.1 30,194 - LU632_RS00155 0.37 -0.1 30,200 - LU632_RS00155 0.39 -0.5 30,200 - LU632_RS00155 0.39 -0.1 30,200 - LU632_RS00155 0.39 -1.1 30,307 - LU632_RS00155 0.67 +0.4 30,317 - LU632_RS00155 0.70 -0.3 30,341 + LU632_RS00155 0.76 -0.3 30,341 + LU632_RS00155 0.76 +0.2 30,346 + LU632_RS00155 0.78 -0.1 30,476 - -1.2 31,462 + LU632_RS00165 0.27 +0.2 31,462 + LU632_RS00165 0.27 -0.4 31,695 - LU632_RS00165 0.60 -0.1 32,012 + +0.6 32,013 - +0.1 32,018 + +1.1 32,018 + +0.3 32,028 + +0.3 32,029 - -0.5 32,029 - +0.1 32,036 + -0.4 32,036 + +0.6 32,037 - +0.7 32,037 - +0.7 32,037 - -1.0 32,037 - +1.7 32,040 + -0.0 32,041 - -0.2 32,041 - +0.9 32,068 + +2.7 32,068 + +0.8 32,203 + LU632_RS00170 0.25 +0.3 32,203 + LU632_RS00170 0.25 +0.4 32,204 - LU632_RS00170 0.25 +1.5 32,206 + LU632_RS00170 0.25 -0.3 32,206 + LU632_RS00170 0.25 -1.5 32,206 + LU632_RS00170 0.25 -0.2 32,207 - LU632_RS00170 0.25 -0.7 32,207 - LU632_RS00170 0.25 -0.2 32,207 - LU632_RS00170 0.25 -0.3 32,207 - LU632_RS00170 0.25 -0.6 32,209 - LU632_RS00170 0.26 +0.3
Or see this region's nucleotide sequence