Strain Fitness in Escherichia coli BL21 around ECD_04258

Experiment: Control_TnA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04257 and ECD_04258 are separated by 126 nucleotidesECD_04258 and ECD_04259 are separated by 51 nucleotides ECD_04257: ECD_04257 - 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked, at 4,535,698 to 4,536,477 _04257 ECD_04258: ECD_04258 - thymidine phosphorylase, at 4,536,604 to 4,537,926 _04258 ECD_04259: ECD_04259 - phosphopentomutase, at 4,537,978 to 4,539,201 _04259 Position (kb) 4536 4537 4538Strain fitness (log2 ratio) -2 -1 0 1at 4535.613 kb on - strandat 4535.783 kb on + strand, within ECD_04257at 4535.784 kb on - strand, within ECD_04257at 4535.833 kb on - strand, within ECD_04257at 4535.838 kb on + strand, within ECD_04257at 4535.838 kb on + strand, within ECD_04257at 4535.838 kb on + strand, within ECD_04257at 4535.838 kb on + strand, within ECD_04257at 4535.838 kb on + strand, within ECD_04257at 4535.839 kb on - strand, within ECD_04257at 4535.839 kb on - strand, within ECD_04257at 4535.839 kb on - strand, within ECD_04257at 4535.843 kb on - strand, within ECD_04257at 4535.910 kb on + strand, within ECD_04257at 4536.072 kb on + strand, within ECD_04257at 4536.098 kb on + strand, within ECD_04257at 4536.099 kb on - strand, within ECD_04257at 4536.456 kb on + strandat 4536.457 kb on - strandat 4536.472 kb on + strandat 4536.473 kb on - strandat 4536.475 kb on + strandat 4536.475 kb on + strandat 4536.475 kb on + strandat 4536.475 kb on + strandat 4536.475 kb on + strandat 4536.476 kb on - strandat 4536.476 kb on - strandat 4536.476 kb on - strandat 4536.479 kb on + strandat 4536.479 kb on + strandat 4536.480 kb on - strandat 4536.527 kb on + strandat 4536.527 kb on + strandat 4536.527 kb on + strandat 4536.853 kb on - strand, within ECD_04258at 4536.853 kb on - strand, within ECD_04258at 4536.925 kb on + strand, within ECD_04258at 4536.925 kb on + strand, within ECD_04258at 4536.928 kb on - strand, within ECD_04258at 4536.961 kb on - strand, within ECD_04258at 4537.042 kb on - strand, within ECD_04258at 4537.120 kb on - strand, within ECD_04258at 4537.234 kb on - strand, within ECD_04258at 4537.244 kb on - strand, within ECD_04258at 4537.244 kb on - strand, within ECD_04258at 4537.455 kb on + strand, within ECD_04258at 4537.455 kb on + strand, within ECD_04258at 4537.455 kb on + strand, within ECD_04258at 4537.456 kb on - strand, within ECD_04258at 4537.456 kb on - strand, within ECD_04258at 4537.524 kb on + strand, within ECD_04258at 4537.525 kb on - strand, within ECD_04258at 4537.549 kb on - strand, within ECD_04258at 4537.549 kb on - strand, within ECD_04258at 4537.592 kb on - strand, within ECD_04258at 4537.592 kb on - strand, within ECD_04258at 4537.592 kb on - strand, within ECD_04258at 4537.600 kb on + strand, within ECD_04258at 4537.600 kb on + strand, within ECD_04258at 4537.634 kb on - strand, within ECD_04258at 4537.634 kb on - strand, within ECD_04258at 4537.738 kb on + strand, within ECD_04258at 4537.739 kb on - strand, within ECD_04258at 4537.867 kb on - strandat 4537.879 kb on - strandat 4537.931 kb on - strandat 4537.932 kb on + strandat 4537.977 kb on + strandat 4537.977 kb on + strandat 4537.977 kb on + strandat 4537.977 kb on + strandat 4537.977 kb on + strandat 4537.977 kb on + strandat 4537.977 kb on + strandat 4537.977 kb on + strandat 4537.978 kb on - strandat 4537.992 kb on + strandat 4537.992 kb on + strandat 4537.992 kb on + strandat 4537.992 kb on + strandat 4538.268 kb on + strand, within ECD_04259at 4538.484 kb on + strand, within ECD_04259at 4538.593 kb on + strand, within ECD_04259at 4538.767 kb on + strand, within ECD_04259at 4538.859 kb on + strand, within ECD_04259at 4538.860 kb on - strand, within ECD_04259

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnA
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4,535,613 - -0.2
4,535,783 + ECD_04257 0.11 -0.5
4,535,784 - ECD_04257 0.11 -0.9
4,535,833 - ECD_04257 0.17 +0.3
4,535,838 + ECD_04257 0.18 -0.3
4,535,838 + ECD_04257 0.18 -0.0
4,535,838 + ECD_04257 0.18 -0.0
4,535,838 + ECD_04257 0.18 -0.2
4,535,838 + ECD_04257 0.18 -0.2
4,535,839 - ECD_04257 0.18 +0.6
4,535,839 - ECD_04257 0.18 -0.4
4,535,839 - ECD_04257 0.18 -1.2
4,535,843 - ECD_04257 0.19 -1.1
4,535,910 + ECD_04257 0.27 -0.3
4,536,072 + ECD_04257 0.48 -0.4
4,536,098 + ECD_04257 0.51 +0.0
4,536,099 - ECD_04257 0.51 -0.8
4,536,456 + -0.6
4,536,457 - -0.0
4,536,472 + +0.3
4,536,473 - -0.1
4,536,475 + -1.0
4,536,475 + -2.6
4,536,475 + +0.1
4,536,475 + -0.1
4,536,475 + +0.1
4,536,476 - -0.0
4,536,476 - -0.7
4,536,476 - +0.0
4,536,479 + -0.2
4,536,479 + +0.1
4,536,480 - -0.4
4,536,527 + +0.3
4,536,527 + +0.6
4,536,527 + +0.7
4,536,853 - ECD_04258 0.19 +0.5
4,536,853 - ECD_04258 0.19 +0.9
4,536,925 + ECD_04258 0.24 -0.8
4,536,925 + ECD_04258 0.24 -0.0
4,536,928 - ECD_04258 0.24 +1.2
4,536,961 - ECD_04258 0.27 -0.9
4,537,042 - ECD_04258 0.33 +0.0
4,537,120 - ECD_04258 0.39 +0.5
4,537,234 - ECD_04258 0.48 +0.9
4,537,244 - ECD_04258 0.48 -1.0
4,537,244 - ECD_04258 0.48 -0.6
4,537,455 + ECD_04258 0.64 +0.1
4,537,455 + ECD_04258 0.64 +1.3
4,537,455 + ECD_04258 0.64 +0.2
4,537,456 - ECD_04258 0.64 -0.7
4,537,456 - ECD_04258 0.64 -0.6
4,537,524 + ECD_04258 0.70 -0.4
4,537,525 - ECD_04258 0.70 -0.7
4,537,549 - ECD_04258 0.71 +0.4
4,537,549 - ECD_04258 0.71 +1.2
4,537,592 - ECD_04258 0.75 -0.4
4,537,592 - ECD_04258 0.75 -1.6
4,537,592 - ECD_04258 0.75 +1.3
4,537,600 + ECD_04258 0.75 +0.9
4,537,600 + ECD_04258 0.75 +0.4
4,537,634 - ECD_04258 0.78 +0.7
4,537,634 - ECD_04258 0.78 -0.4
4,537,738 + ECD_04258 0.86 +0.5
4,537,739 - ECD_04258 0.86 -0.8
4,537,867 - +0.4
4,537,879 - +0.3
4,537,931 - +0.7
4,537,932 + -0.1
4,537,977 + +0.8
4,537,977 + -0.1
4,537,977 + -2.0
4,537,977 + -0.5
4,537,977 + -0.6
4,537,977 + +0.7
4,537,977 + -0.2
4,537,977 + -0.0
4,537,978 - -1.5
4,537,992 + +0.5
4,537,992 + -0.4
4,537,992 + -0.1
4,537,992 + -0.2
4,538,268 + ECD_04259 0.24 +0.3
4,538,484 + ECD_04259 0.41 -0.2
4,538,593 + ECD_04259 0.50 +0.1
4,538,767 + ECD_04259 0.64 -0.9
4,538,859 + ECD_04259 0.72 -1.0
4,538,860 - ECD_04259 0.72 -0.1

Or see this region's nucleotide sequence