Experiment: Control_TnA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04257 and ECD_04258 are separated by 126 nucleotides ECD_04258 and ECD_04259 are separated by 51 nucleotides
ECD_04257: ECD_04257 - 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked, at 4,535,698 to 4,536,477
_04257
ECD_04258: ECD_04258 - thymidine phosphorylase, at 4,536,604 to 4,537,926
_04258
ECD_04259: ECD_04259 - phosphopentomutase, at 4,537,978 to 4,539,201
_04259
Position (kb)
4536
4537
4538 Strain fitness (log2 ratio)
-2
-1
0
1 at 4535.613 kb on - strand at 4535.783 kb on + strand, within ECD_04257 at 4535.784 kb on - strand, within ECD_04257 at 4535.833 kb on - strand, within ECD_04257 at 4535.838 kb on + strand, within ECD_04257 at 4535.838 kb on + strand, within ECD_04257 at 4535.838 kb on + strand, within ECD_04257 at 4535.838 kb on + strand, within ECD_04257 at 4535.838 kb on + strand, within ECD_04257 at 4535.839 kb on - strand, within ECD_04257 at 4535.839 kb on - strand, within ECD_04257 at 4535.839 kb on - strand, within ECD_04257 at 4535.843 kb on - strand, within ECD_04257 at 4535.910 kb on + strand, within ECD_04257 at 4536.072 kb on + strand, within ECD_04257 at 4536.098 kb on + strand, within ECD_04257 at 4536.099 kb on - strand, within ECD_04257 at 4536.456 kb on + strand at 4536.457 kb on - strand at 4536.472 kb on + strand at 4536.473 kb on - strand at 4536.475 kb on + strand at 4536.475 kb on + strand at 4536.475 kb on + strand at 4536.475 kb on + strand at 4536.475 kb on + strand at 4536.476 kb on - strand at 4536.476 kb on - strand at 4536.476 kb on - strand at 4536.479 kb on + strand at 4536.479 kb on + strand at 4536.480 kb on - strand at 4536.527 kb on + strand at 4536.527 kb on + strand at 4536.527 kb on + strand at 4536.853 kb on - strand, within ECD_04258 at 4536.853 kb on - strand, within ECD_04258 at 4536.925 kb on + strand, within ECD_04258 at 4536.925 kb on + strand, within ECD_04258 at 4536.928 kb on - strand, within ECD_04258 at 4536.961 kb on - strand, within ECD_04258 at 4537.042 kb on - strand, within ECD_04258 at 4537.120 kb on - strand, within ECD_04258 at 4537.234 kb on - strand, within ECD_04258 at 4537.244 kb on - strand, within ECD_04258 at 4537.244 kb on - strand, within ECD_04258 at 4537.455 kb on + strand, within ECD_04258 at 4537.455 kb on + strand, within ECD_04258 at 4537.455 kb on + strand, within ECD_04258 at 4537.456 kb on - strand, within ECD_04258 at 4537.456 kb on - strand, within ECD_04258 at 4537.524 kb on + strand, within ECD_04258 at 4537.525 kb on - strand, within ECD_04258 at 4537.549 kb on - strand, within ECD_04258 at 4537.549 kb on - strand, within ECD_04258 at 4537.592 kb on - strand, within ECD_04258 at 4537.592 kb on - strand, within ECD_04258 at 4537.592 kb on - strand, within ECD_04258 at 4537.600 kb on + strand, within ECD_04258 at 4537.600 kb on + strand, within ECD_04258 at 4537.634 kb on - strand, within ECD_04258 at 4537.634 kb on - strand, within ECD_04258 at 4537.738 kb on + strand, within ECD_04258 at 4537.739 kb on - strand, within ECD_04258 at 4537.867 kb on - strand at 4537.879 kb on - strand at 4537.931 kb on - strand at 4537.932 kb on + strand at 4537.977 kb on + strand at 4537.977 kb on + strand at 4537.977 kb on + strand at 4537.977 kb on + strand at 4537.977 kb on + strand at 4537.977 kb on + strand at 4537.977 kb on + strand at 4537.977 kb on + strand at 4537.978 kb on - strand at 4537.992 kb on + strand at 4537.992 kb on + strand at 4537.992 kb on + strand at 4537.992 kb on + strand at 4538.268 kb on + strand, within ECD_04259 at 4538.484 kb on + strand, within ECD_04259 at 4538.593 kb on + strand, within ECD_04259 at 4538.767 kb on + strand, within ECD_04259 at 4538.859 kb on + strand, within ECD_04259 at 4538.860 kb on - strand, within ECD_04259
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnA remove 4,535,613 - -0.2 4,535,783 + ECD_04257 0.11 -0.5 4,535,784 - ECD_04257 0.11 -0.9 4,535,833 - ECD_04257 0.17 +0.3 4,535,838 + ECD_04257 0.18 -0.3 4,535,838 + ECD_04257 0.18 -0.0 4,535,838 + ECD_04257 0.18 -0.0 4,535,838 + ECD_04257 0.18 -0.2 4,535,838 + ECD_04257 0.18 -0.2 4,535,839 - ECD_04257 0.18 +0.6 4,535,839 - ECD_04257 0.18 -0.4 4,535,839 - ECD_04257 0.18 -1.2 4,535,843 - ECD_04257 0.19 -1.1 4,535,910 + ECD_04257 0.27 -0.3 4,536,072 + ECD_04257 0.48 -0.4 4,536,098 + ECD_04257 0.51 +0.0 4,536,099 - ECD_04257 0.51 -0.8 4,536,456 + -0.6 4,536,457 - -0.0 4,536,472 + +0.3 4,536,473 - -0.1 4,536,475 + -1.0 4,536,475 + -2.6 4,536,475 + +0.1 4,536,475 + -0.1 4,536,475 + +0.1 4,536,476 - -0.0 4,536,476 - -0.7 4,536,476 - +0.0 4,536,479 + -0.2 4,536,479 + +0.1 4,536,480 - -0.4 4,536,527 + +0.3 4,536,527 + +0.6 4,536,527 + +0.7 4,536,853 - ECD_04258 0.19 +0.5 4,536,853 - ECD_04258 0.19 +0.9 4,536,925 + ECD_04258 0.24 -0.8 4,536,925 + ECD_04258 0.24 -0.0 4,536,928 - ECD_04258 0.24 +1.2 4,536,961 - ECD_04258 0.27 -0.9 4,537,042 - ECD_04258 0.33 +0.0 4,537,120 - ECD_04258 0.39 +0.5 4,537,234 - ECD_04258 0.48 +0.9 4,537,244 - ECD_04258 0.48 -1.0 4,537,244 - ECD_04258 0.48 -0.6 4,537,455 + ECD_04258 0.64 +0.1 4,537,455 + ECD_04258 0.64 +1.3 4,537,455 + ECD_04258 0.64 +0.2 4,537,456 - ECD_04258 0.64 -0.7 4,537,456 - ECD_04258 0.64 -0.6 4,537,524 + ECD_04258 0.70 -0.4 4,537,525 - ECD_04258 0.70 -0.7 4,537,549 - ECD_04258 0.71 +0.4 4,537,549 - ECD_04258 0.71 +1.2 4,537,592 - ECD_04258 0.75 -0.4 4,537,592 - ECD_04258 0.75 -1.6 4,537,592 - ECD_04258 0.75 +1.3 4,537,600 + ECD_04258 0.75 +0.9 4,537,600 + ECD_04258 0.75 +0.4 4,537,634 - ECD_04258 0.78 +0.7 4,537,634 - ECD_04258 0.78 -0.4 4,537,738 + ECD_04258 0.86 +0.5 4,537,739 - ECD_04258 0.86 -0.8 4,537,867 - +0.4 4,537,879 - +0.3 4,537,931 - +0.7 4,537,932 + -0.1 4,537,977 + +0.8 4,537,977 + -0.1 4,537,977 + -2.0 4,537,977 + -0.5 4,537,977 + -0.6 4,537,977 + +0.7 4,537,977 + -0.2 4,537,977 + -0.0 4,537,978 - -1.5 4,537,992 + +0.5 4,537,992 + -0.4 4,537,992 + -0.1 4,537,992 + -0.2 4,538,268 + ECD_04259 0.24 +0.3 4,538,484 + ECD_04259 0.41 -0.2 4,538,593 + ECD_04259 0.50 +0.1 4,538,767 + ECD_04259 0.64 -0.9 4,538,859 + ECD_04259 0.72 -1.0 4,538,860 - ECD_04259 0.72 -0.1
Or see this region's nucleotide sequence