Strain Fitness in Escherichia coli BL21 around ECD_04041

Experiment: Control_TnA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04040 and ECD_04041 are separated by 85 nucleotidesECD_04041 and ECD_04042 are separated by 2 nucleotides ECD_04040: ECD_04040 - GTPase, stimulated by 50S subunit binding; Mn(2+) homeostasis regulator, at 4,307,192 to 4,308,472 _04040 ECD_04041: ECD_04041 - modulator for HflB protease specific for phage lambda cII repressor, at 4,308,558 to 4,309,817 _04041 ECD_04042: ECD_04042 - HflB protease modulator specific for phage lambda cII repressor, at 4,309,820 to 4,310,824 _04042 Position (kb) 4308 4309 4310Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4307.806 kb on + strand, within ECD_04040at 4307.905 kb on + strand, within ECD_04040at 4307.934 kb on + strand, within ECD_04040at 4307.949 kb on + strand, within ECD_04040at 4307.949 kb on + strand, within ECD_04040at 4307.992 kb on + strand, within ECD_04040at 4307.992 kb on + strand, within ECD_04040at 4308.027 kb on + strand, within ECD_04040at 4308.063 kb on + strand, within ECD_04040at 4308.295 kb on + strand, within ECD_04040at 4308.295 kb on + strand, within ECD_04040at 4308.295 kb on + strand, within ECD_04040at 4308.295 kb on + strand, within ECD_04040at 4308.390 kb on + strandat 4308.544 kb on + strandat 4308.544 kb on + strandat 4308.544 kb on + strandat 4309.152 kb on + strand, within ECD_04041at 4309.368 kb on + strand, within ECD_04041at 4309.412 kb on + strand, within ECD_04041at 4309.536 kb on + strand, within ECD_04041at 4309.536 kb on + strand, within ECD_04041at 4309.868 kb on + strandat 4309.909 kb on + strandat 4309.929 kb on + strand, within ECD_04042at 4309.986 kb on + strand, within ECD_04042at 4310.182 kb on + strand, within ECD_04042at 4310.182 kb on + strand, within ECD_04042at 4310.317 kb on + strand, within ECD_04042at 4310.449 kb on + strand, within ECD_04042at 4310.699 kb on + strand, within ECD_04042

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnA
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4,307,806 + ECD_04040 0.48 +1.0
4,307,905 + ECD_04040 0.56 +0.2
4,307,934 + ECD_04040 0.58 +0.2
4,307,949 + ECD_04040 0.59 +0.8
4,307,949 + ECD_04040 0.59 -0.2
4,307,992 + ECD_04040 0.62 +0.1
4,307,992 + ECD_04040 0.62 +0.2
4,308,027 + ECD_04040 0.65 +0.8
4,308,063 + ECD_04040 0.68 -0.7
4,308,295 + ECD_04040 0.86 +0.3
4,308,295 + ECD_04040 0.86 +0.0
4,308,295 + ECD_04040 0.86 -0.0
4,308,295 + ECD_04040 0.86 -0.3
4,308,390 + +1.5
4,308,544 + -0.8
4,308,544 + +2.9
4,308,544 + +0.3
4,309,152 + ECD_04041 0.47 -1.7
4,309,368 + ECD_04041 0.64 +0.3
4,309,412 + ECD_04041 0.68 -1.3
4,309,536 + ECD_04041 0.78 -1.4
4,309,536 + ECD_04041 0.78 -1.9
4,309,868 + -0.6
4,309,909 + -1.8
4,309,929 + ECD_04042 0.11 +1.5
4,309,986 + ECD_04042 0.17 -0.4
4,310,182 + ECD_04042 0.36 +0.1
4,310,182 + ECD_04042 0.36 -0.4
4,310,317 + ECD_04042 0.49 -1.0
4,310,449 + ECD_04042 0.63 -1.3
4,310,699 + ECD_04042 0.87 +1.6

Or see this region's nucleotide sequence