Strain Fitness in Escherichia coli BL21 around ECD_03952

Experiment: Control_TnA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03951 and ECD_03952 are separated by 197 nucleotidesECD_03952 and ECD_03953 overlap by 4 nucleotides ECD_03951: ECD_03951 - formate dehydrogenase-H, selenopolypeptide subunit, at 4,204,406 to 4,206,553 _03951 ECD_03952: ECD_03952 - outer membrane factor of efflux pump, at 4,206,751 to 4,208,217 _03952 ECD_03953: ECD_03953 - membrane translocase (MDR) of MdtNOP efflux pump, PET family, at 4,208,214 to 4,210,265 _03953 Position (kb) 4206 4207 4208 4209Strain fitness (log2 ratio) -1 0 1 2at 4205.960 kb on - strand, within ECD_03951at 4206.002 kb on + strand, within ECD_03951at 4206.071 kb on - strand, within ECD_03951at 4206.073 kb on + strand, within ECD_03951at 4206.074 kb on - strand, within ECD_03951at 4206.160 kb on + strand, within ECD_03951at 4206.197 kb on + strand, within ECD_03951at 4206.197 kb on + strand, within ECD_03951at 4206.198 kb on - strand, within ECD_03951at 4206.198 kb on - strand, within ECD_03951at 4206.198 kb on - strand, within ECD_03951at 4206.201 kb on + strand, within ECD_03951at 4206.201 kb on + strand, within ECD_03951at 4206.201 kb on + strand, within ECD_03951at 4206.201 kb on + strand, within ECD_03951at 4206.202 kb on - strand, within ECD_03951at 4206.202 kb on - strand, within ECD_03951at 4206.202 kb on - strand, within ECD_03951at 4206.261 kb on + strand, within ECD_03951at 4206.262 kb on - strand, within ECD_03951at 4206.297 kb on + strand, within ECD_03951at 4206.297 kb on + strand, within ECD_03951at 4206.298 kb on - strand, within ECD_03951at 4206.415 kb on - strandat 4206.415 kb on - strandat 4206.415 kb on - strandat 4206.415 kb on - strandat 4206.437 kb on - strandat 4206.526 kb on - strandat 4206.603 kb on + strandat 4206.603 kb on + strandat 4206.603 kb on + strandat 4206.604 kb on - strandat 4206.604 kb on - strandat 4206.604 kb on - strandat 4206.604 kb on - strandat 4206.627 kb on - strandat 4206.662 kb on + strandat 4206.663 kb on - strandat 4206.848 kb on - strandat 4207.059 kb on - strand, within ECD_03952at 4207.059 kb on - strand, within ECD_03952at 4207.059 kb on - strand, within ECD_03952at 4207.059 kb on - strand, within ECD_03952at 4207.059 kb on - strand, within ECD_03952at 4207.334 kb on + strand, within ECD_03952at 4207.616 kb on + strand, within ECD_03952at 4207.630 kb on - strand, within ECD_03952at 4207.634 kb on + strand, within ECD_03952at 4207.634 kb on + strand, within ECD_03952at 4207.637 kb on + strand, within ECD_03952at 4207.666 kb on + strand, within ECD_03952at 4207.666 kb on + strand, within ECD_03952at 4207.672 kb on + strand, within ECD_03952at 4207.673 kb on - strand, within ECD_03952at 4207.777 kb on + strand, within ECD_03952at 4207.777 kb on + strand, within ECD_03952at 4207.777 kb on + strand, within ECD_03952at 4207.794 kb on - strand, within ECD_03952at 4207.797 kb on - strand, within ECD_03952at 4207.797 kb on - strand, within ECD_03952at 4207.844 kb on - strand, within ECD_03952at 4207.901 kb on - strand, within ECD_03952at 4207.901 kb on - strand, within ECD_03952at 4207.918 kb on + strand, within ECD_03952at 4207.987 kb on + strand, within ECD_03952at 4207.988 kb on - strand, within ECD_03952at 4208.134 kb on - strandat 4208.138 kb on - strandat 4208.317 kb on - strandat 4208.407 kb on + strandat 4208.408 kb on - strandat 4208.452 kb on - strand, within ECD_03953at 4208.637 kb on + strand, within ECD_03953at 4208.638 kb on - strand, within ECD_03953at 4208.638 kb on - strand, within ECD_03953at 4208.638 kb on - strand, within ECD_03953at 4208.639 kb on + strand, within ECD_03953at 4208.640 kb on - strand, within ECD_03953at 4208.640 kb on - strand, within ECD_03953at 4208.640 kb on - strand, within ECD_03953at 4208.653 kb on + strand, within ECD_03953at 4208.653 kb on + strand, within ECD_03953at 4208.654 kb on - strand, within ECD_03953at 4208.697 kb on + strand, within ECD_03953at 4208.698 kb on - strand, within ECD_03953at 4208.698 kb on - strand, within ECD_03953at 4208.702 kb on + strand, within ECD_03953at 4208.706 kb on + strand, within ECD_03953at 4208.707 kb on - strand, within ECD_03953at 4208.711 kb on + strand, within ECD_03953at 4208.711 kb on + strand, within ECD_03953at 4208.712 kb on - strand, within ECD_03953at 4208.712 kb on - strand, within ECD_03953at 4208.776 kb on + strand, within ECD_03953at 4208.846 kb on - strand, within ECD_03953at 4208.846 kb on - strand, within ECD_03953at 4208.911 kb on + strand, within ECD_03953at 4208.911 kb on + strand, within ECD_03953at 4208.911 kb on + strand, within ECD_03953at 4208.912 kb on - strand, within ECD_03953at 4208.912 kb on - strand, within ECD_03953at 4208.912 kb on - strand, within ECD_03953at 4208.960 kb on + strand, within ECD_03953at 4208.960 kb on + strand, within ECD_03953at 4208.961 kb on - strand, within ECD_03953at 4208.990 kb on + strand, within ECD_03953at 4208.990 kb on + strand, within ECD_03953at 4208.991 kb on - strand, within ECD_03953at 4208.991 kb on - strand, within ECD_03953at 4209.128 kb on + strand, within ECD_03953at 4209.129 kb on - strand, within ECD_03953at 4209.129 kb on - strand, within ECD_03953at 4209.163 kb on + strand, within ECD_03953at 4209.164 kb on - strand, within ECD_03953at 4209.164 kb on - strand, within ECD_03953at 4209.172 kb on + strand, within ECD_03953at 4209.217 kb on + strand, within ECD_03953at 4209.217 kb on + strand, within ECD_03953

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnA
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4,205,960 - ECD_03951 0.72 +0.6
4,206,002 + ECD_03951 0.74 +0.1
4,206,071 - ECD_03951 0.78 +1.9
4,206,073 + ECD_03951 0.78 -0.4
4,206,074 - ECD_03951 0.78 -0.3
4,206,160 + ECD_03951 0.82 +0.1
4,206,197 + ECD_03951 0.83 +0.3
4,206,197 + ECD_03951 0.83 -0.4
4,206,198 - ECD_03951 0.83 -0.4
4,206,198 - ECD_03951 0.83 -0.8
4,206,198 - ECD_03951 0.83 +0.5
4,206,201 + ECD_03951 0.84 +1.0
4,206,201 + ECD_03951 0.84 -0.0
4,206,201 + ECD_03951 0.84 +1.9
4,206,201 + ECD_03951 0.84 -0.0
4,206,202 - ECD_03951 0.84 +0.8
4,206,202 - ECD_03951 0.84 +0.1
4,206,202 - ECD_03951 0.84 +0.3
4,206,261 + ECD_03951 0.86 +0.6
4,206,262 - ECD_03951 0.86 -0.5
4,206,297 + ECD_03951 0.88 +0.7
4,206,297 + ECD_03951 0.88 -0.1
4,206,298 - ECD_03951 0.88 +0.2
4,206,415 - -0.1
4,206,415 - +1.7
4,206,415 - +0.7
4,206,415 - +0.3
4,206,437 - -0.3
4,206,526 - -0.6
4,206,603 + +0.0
4,206,603 + +0.9
4,206,603 + +0.4
4,206,604 - +0.2
4,206,604 - -0.8
4,206,604 - +0.7
4,206,604 - -0.3
4,206,627 - +0.5
4,206,662 + +0.7
4,206,663 - +0.4
4,206,848 - -0.6
4,207,059 - ECD_03952 0.21 -0.2
4,207,059 - ECD_03952 0.21 +0.3
4,207,059 - ECD_03952 0.21 -1.0
4,207,059 - ECD_03952 0.21 -0.2
4,207,059 - ECD_03952 0.21 +0.3
4,207,334 + ECD_03952 0.40 +1.4
4,207,616 + ECD_03952 0.59 -1.0
4,207,630 - ECD_03952 0.60 -0.5
4,207,634 + ECD_03952 0.60 +0.1
4,207,634 + ECD_03952 0.60 -0.4
4,207,637 + ECD_03952 0.60 +0.2
4,207,666 + ECD_03952 0.62 +0.1
4,207,666 + ECD_03952 0.62 -0.2
4,207,672 + ECD_03952 0.63 -0.2
4,207,673 - ECD_03952 0.63 -0.5
4,207,777 + ECD_03952 0.70 +0.1
4,207,777 + ECD_03952 0.70 -0.3
4,207,777 + ECD_03952 0.70 -0.5
4,207,794 - ECD_03952 0.71 -0.8
4,207,797 - ECD_03952 0.71 +0.8
4,207,797 - ECD_03952 0.71 +0.3
4,207,844 - ECD_03952 0.75 -0.4
4,207,901 - ECD_03952 0.78 -0.9
4,207,901 - ECD_03952 0.78 -0.4
4,207,918 + ECD_03952 0.80 -0.5
4,207,987 + ECD_03952 0.84 +0.8
4,207,988 - ECD_03952 0.84 +1.3
4,208,134 - -1.4
4,208,138 - -0.8
4,208,317 - -0.0
4,208,407 + -0.4
4,208,408 - +0.4
4,208,452 - ECD_03953 0.12 -0.2
4,208,637 + ECD_03953 0.21 +0.4
4,208,638 - ECD_03953 0.21 +0.5
4,208,638 - ECD_03953 0.21 +0.7
4,208,638 - ECD_03953 0.21 +0.2
4,208,639 + ECD_03953 0.21 -0.3
4,208,640 - ECD_03953 0.21 -0.5
4,208,640 - ECD_03953 0.21 -0.4
4,208,640 - ECD_03953 0.21 -1.1
4,208,653 + ECD_03953 0.21 +0.0
4,208,653 + ECD_03953 0.21 +1.8
4,208,654 - ECD_03953 0.21 -0.2
4,208,697 + ECD_03953 0.24 +1.1
4,208,698 - ECD_03953 0.24 +0.5
4,208,698 - ECD_03953 0.24 -1.4
4,208,702 + ECD_03953 0.24 +0.2
4,208,706 + ECD_03953 0.24 -0.0
4,208,707 - ECD_03953 0.24 -0.4
4,208,711 + ECD_03953 0.24 -0.4
4,208,711 + ECD_03953 0.24 +1.2
4,208,712 - ECD_03953 0.24 +0.2
4,208,712 - ECD_03953 0.24 +0.1
4,208,776 + ECD_03953 0.27 -0.4
4,208,846 - ECD_03953 0.31 -0.4
4,208,846 - ECD_03953 0.31 -0.2
4,208,911 + ECD_03953 0.34 -0.3
4,208,911 + ECD_03953 0.34 -0.9
4,208,911 + ECD_03953 0.34 +0.5
4,208,912 - ECD_03953 0.34 -1.4
4,208,912 - ECD_03953 0.34 +0.3
4,208,912 - ECD_03953 0.34 +1.1
4,208,960 + ECD_03953 0.36 -0.8
4,208,960 + ECD_03953 0.36 -0.2
4,208,961 - ECD_03953 0.36 -0.3
4,208,990 + ECD_03953 0.38 +1.7
4,208,990 + ECD_03953 0.38 -0.1
4,208,991 - ECD_03953 0.38 -0.5
4,208,991 - ECD_03953 0.38 +0.8
4,209,128 + ECD_03953 0.45 +0.2
4,209,129 - ECD_03953 0.45 -0.4
4,209,129 - ECD_03953 0.45 +1.5
4,209,163 + ECD_03953 0.46 -1.3
4,209,164 - ECD_03953 0.46 +0.8
4,209,164 - ECD_03953 0.46 +0.0
4,209,172 + ECD_03953 0.47 -0.6
4,209,217 + ECD_03953 0.49 +0.8
4,209,217 + ECD_03953 0.49 +0.1

Or see this region's nucleotide sequence