Strain Fitness in Escherichia coli BL21 around ECD_03807

Experiment: Control_TnA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03805 and ECD_03806 are separated by 100 nucleotidesECD_03806 and ECD_03807 are separated by 211 nucleotidesECD_03807 and ECD_03808 are separated by 26 nucleotidesECD_03808 and ECD_03809 are separated by 4 nucleotides ECD_03805: ECD_03805 - DUF1454 family putative periplasmic protein, at 4,019,537 to 4,020,136 _03805 ECD_03806: ECD_03806 - DUF805 family putative inner membrane protein, at 4,020,237 to 4,020,677 _03806 ECD_03807: ECD_03807 - UPF0381 family protein, at 4,020,889 to 4,021,188 _03807 ECD_03808: ECD_03808 - stress-induced protein, at 4,021,215 to 4,021,643 _03808 ECD_03809: ECD_03809 - ferredoxin-NADP reductase; flavodoxin reductase, at 4,021,648 to 4,022,394 _03809 Position (kb) 4020 4021 4022Strain fitness (log2 ratio) -2 -1 0 1at 4020.056 kb on - strand, within ECD_03805at 4020.105 kb on - strandat 4020.121 kb on + strandat 4020.122 kb on - strandat 4020.143 kb on + strandat 4020.154 kb on - strandat 4020.177 kb on + strandat 4020.234 kb on + strandat 4020.234 kb on + strandat 4020.234 kb on + strandat 4020.234 kb on + strandat 4020.234 kb on + strandat 4020.234 kb on + strandat 4020.234 kb on + strandat 4020.235 kb on - strandat 4020.235 kb on - strandat 4020.235 kb on - strandat 4020.235 kb on - strandat 4020.244 kb on + strandat 4020.245 kb on - strandat 4020.245 kb on - strandat 4020.245 kb on - strandat 4020.245 kb on - strandat 4020.256 kb on + strandat 4020.694 kb on + strandat 4020.719 kb on + strandat 4020.811 kb on + strandat 4020.812 kb on - strandat 4020.875 kb on + strandat 4020.875 kb on + strandat 4020.875 kb on + strandat 4020.876 kb on - strandat 4020.888 kb on + strandat 4020.902 kb on + strandat 4020.915 kb on + strandat 4020.919 kb on - strand, within ECD_03807at 4020.966 kb on + strand, within ECD_03807at 4020.966 kb on + strand, within ECD_03807at 4020.967 kb on - strand, within ECD_03807at 4021.081 kb on + strand, within ECD_03807at 4021.082 kb on - strand, within ECD_03807at 4021.084 kb on - strand, within ECD_03807at 4021.156 kb on - strand, within ECD_03807at 4021.156 kb on - strand, within ECD_03807at 4021.166 kb on + strandat 4021.210 kb on + strandat 4021.210 kb on + strandat 4021.210 kb on + strandat 4021.211 kb on - strandat 4021.221 kb on + strandat 4021.221 kb on + strandat 4021.222 kb on - strandat 4021.222 kb on - strandat 4021.223 kb on + strandat 4021.277 kb on + strand, within ECD_03808at 4021.322 kb on - strand, within ECD_03808at 4021.329 kb on - strand, within ECD_03808at 4021.342 kb on + strand, within ECD_03808at 4021.385 kb on + strand, within ECD_03808at 4021.386 kb on - strand, within ECD_03808at 4021.425 kb on + strand, within ECD_03808at 4021.426 kb on - strand, within ECD_03808at 4021.428 kb on - strand, within ECD_03808at 4021.428 kb on - strand, within ECD_03808at 4021.560 kb on - strand, within ECD_03808at 4021.598 kb on + strand, within ECD_03808at 4021.598 kb on + strand, within ECD_03808at 4021.598 kb on + strand, within ECD_03808at 4021.637 kb on + strandat 4021.642 kb on - strandat 4021.656 kb on - strandat 4021.691 kb on - strandat 4021.734 kb on + strand, within ECD_03809at 4021.734 kb on + strand, within ECD_03809at 4021.785 kb on + strand, within ECD_03809at 4021.943 kb on + strand, within ECD_03809at 4021.948 kb on + strand, within ECD_03809at 4021.948 kb on + strand, within ECD_03809at 4021.949 kb on - strand, within ECD_03809at 4021.949 kb on - strand, within ECD_03809at 4021.949 kb on - strand, within ECD_03809at 4021.962 kb on - strand, within ECD_03809at 4022.002 kb on + strand, within ECD_03809at 4022.014 kb on + strand, within ECD_03809at 4022.015 kb on - strand, within ECD_03809at 4022.033 kb on + strand, within ECD_03809at 4022.034 kb on - strand, within ECD_03809at 4022.034 kb on - strand, within ECD_03809at 4022.050 kb on - strand, within ECD_03809at 4022.069 kb on - strand, within ECD_03809at 4022.069 kb on - strand, within ECD_03809at 4022.087 kb on - strand, within ECD_03809at 4022.122 kb on - strand, within ECD_03809at 4022.171 kb on - strand, within ECD_03809at 4022.171 kb on - strand, within ECD_03809

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnA
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4,020,056 - ECD_03805 0.86 +0.5
4,020,105 - -0.2
4,020,121 + -0.5
4,020,122 - -1.8
4,020,143 + +0.5
4,020,154 - +1.1
4,020,177 + +0.4
4,020,234 + +0.0
4,020,234 + -1.7
4,020,234 + -0.5
4,020,234 + +1.5
4,020,234 + +1.3
4,020,234 + -0.0
4,020,234 + +0.0
4,020,235 - -0.3
4,020,235 - -0.3
4,020,235 - +0.2
4,020,235 - -0.8
4,020,244 + -1.5
4,020,245 - +0.5
4,020,245 - +0.4
4,020,245 - +0.5
4,020,245 - +0.5
4,020,256 + -0.6
4,020,694 + -0.4
4,020,719 + +0.7
4,020,811 + -0.6
4,020,812 - +0.4
4,020,875 + -0.4
4,020,875 + -0.2
4,020,875 + +0.4
4,020,876 - +0.9
4,020,888 + +0.4
4,020,902 + +0.1
4,020,915 + -0.7
4,020,919 - ECD_03807 0.10 -0.7
4,020,966 + ECD_03807 0.26 -0.3
4,020,966 + ECD_03807 0.26 +0.2
4,020,967 - ECD_03807 0.26 +0.4
4,021,081 + ECD_03807 0.64 -0.6
4,021,082 - ECD_03807 0.64 -1.5
4,021,084 - ECD_03807 0.65 -0.1
4,021,156 - ECD_03807 0.89 +0.6
4,021,156 - ECD_03807 0.89 -0.8
4,021,166 + +0.1
4,021,210 + +0.2
4,021,210 + +0.3
4,021,210 + -0.4
4,021,211 - -0.8
4,021,221 + +0.0
4,021,221 + +0.1
4,021,222 - -0.3
4,021,222 - +0.8
4,021,223 + -0.0
4,021,277 + ECD_03808 0.14 +0.6
4,021,322 - ECD_03808 0.25 +0.5
4,021,329 - ECD_03808 0.27 +0.4
4,021,342 + ECD_03808 0.30 +0.5
4,021,385 + ECD_03808 0.40 +0.2
4,021,386 - ECD_03808 0.40 +0.1
4,021,425 + ECD_03808 0.49 -0.0
4,021,426 - ECD_03808 0.49 -0.0
4,021,428 - ECD_03808 0.50 -0.5
4,021,428 - ECD_03808 0.50 +0.6
4,021,560 - ECD_03808 0.80 -1.1
4,021,598 + ECD_03808 0.89 -1.5
4,021,598 + ECD_03808 0.89 -0.3
4,021,598 + ECD_03808 0.89 -0.1
4,021,637 + -0.3
4,021,642 - +0.3
4,021,656 - -0.2
4,021,691 - -0.9
4,021,734 + ECD_03809 0.12 -1.3
4,021,734 + ECD_03809 0.12 +0.2
4,021,785 + ECD_03809 0.18 +0.0
4,021,943 + ECD_03809 0.39 +1.1
4,021,948 + ECD_03809 0.40 +1.5
4,021,948 + ECD_03809 0.40 -0.9
4,021,949 - ECD_03809 0.40 -1.0
4,021,949 - ECD_03809 0.40 -0.4
4,021,949 - ECD_03809 0.40 +0.8
4,021,962 - ECD_03809 0.42 +0.1
4,022,002 + ECD_03809 0.47 -0.4
4,022,014 + ECD_03809 0.49 -0.4
4,022,015 - ECD_03809 0.49 +0.3
4,022,033 + ECD_03809 0.52 +0.1
4,022,034 - ECD_03809 0.52 -0.0
4,022,034 - ECD_03809 0.52 +0.5
4,022,050 - ECD_03809 0.54 +0.6
4,022,069 - ECD_03809 0.56 +1.0
4,022,069 - ECD_03809 0.56 +0.0
4,022,087 - ECD_03809 0.59 -0.2
4,022,122 - ECD_03809 0.63 +0.5
4,022,171 - ECD_03809 0.70 +0.8
4,022,171 - ECD_03809 0.70 +0.6

Or see this region's nucleotide sequence