Experiment: Control_TnA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03805 and ECD_03806 are separated by 100 nucleotides ECD_03806 and ECD_03807 are separated by 211 nucleotides ECD_03807 and ECD_03808 are separated by 26 nucleotides ECD_03808 and ECD_03809 are separated by 4 nucleotides
ECD_03805: ECD_03805 - DUF1454 family putative periplasmic protein, at 4,019,537 to 4,020,136
_03805
ECD_03806: ECD_03806 - DUF805 family putative inner membrane protein, at 4,020,237 to 4,020,677
_03806
ECD_03807: ECD_03807 - UPF0381 family protein, at 4,020,889 to 4,021,188
_03807
ECD_03808: ECD_03808 - stress-induced protein, at 4,021,215 to 4,021,643
_03808
ECD_03809: ECD_03809 - ferredoxin-NADP reductase; flavodoxin reductase, at 4,021,648 to 4,022,394
_03809
Position (kb)
4020
4021
4022 Strain fitness (log2 ratio)
-2
-1
0
1 at 4020.056 kb on - strand, within ECD_03805 at 4020.105 kb on - strand at 4020.121 kb on + strand at 4020.122 kb on - strand at 4020.143 kb on + strand at 4020.154 kb on - strand at 4020.177 kb on + strand at 4020.234 kb on + strand at 4020.234 kb on + strand at 4020.234 kb on + strand at 4020.234 kb on + strand at 4020.234 kb on + strand at 4020.234 kb on + strand at 4020.234 kb on + strand at 4020.235 kb on - strand at 4020.235 kb on - strand at 4020.235 kb on - strand at 4020.235 kb on - strand at 4020.244 kb on + strand at 4020.245 kb on - strand at 4020.245 kb on - strand at 4020.245 kb on - strand at 4020.245 kb on - strand at 4020.256 kb on + strand at 4020.694 kb on + strand at 4020.719 kb on + strand at 4020.811 kb on + strand at 4020.812 kb on - strand at 4020.875 kb on + strand at 4020.875 kb on + strand at 4020.875 kb on + strand at 4020.876 kb on - strand at 4020.888 kb on + strand at 4020.902 kb on + strand at 4020.915 kb on + strand at 4020.919 kb on - strand, within ECD_03807 at 4020.966 kb on + strand, within ECD_03807 at 4020.966 kb on + strand, within ECD_03807 at 4020.967 kb on - strand, within ECD_03807 at 4021.081 kb on + strand, within ECD_03807 at 4021.082 kb on - strand, within ECD_03807 at 4021.084 kb on - strand, within ECD_03807 at 4021.156 kb on - strand, within ECD_03807 at 4021.156 kb on - strand, within ECD_03807 at 4021.166 kb on + strand at 4021.210 kb on + strand at 4021.210 kb on + strand at 4021.210 kb on + strand at 4021.211 kb on - strand at 4021.221 kb on + strand at 4021.221 kb on + strand at 4021.222 kb on - strand at 4021.222 kb on - strand at 4021.223 kb on + strand at 4021.277 kb on + strand, within ECD_03808 at 4021.322 kb on - strand, within ECD_03808 at 4021.329 kb on - strand, within ECD_03808 at 4021.342 kb on + strand, within ECD_03808 at 4021.385 kb on + strand, within ECD_03808 at 4021.386 kb on - strand, within ECD_03808 at 4021.425 kb on + strand, within ECD_03808 at 4021.426 kb on - strand, within ECD_03808 at 4021.428 kb on - strand, within ECD_03808 at 4021.428 kb on - strand, within ECD_03808 at 4021.560 kb on - strand, within ECD_03808 at 4021.598 kb on + strand, within ECD_03808 at 4021.598 kb on + strand, within ECD_03808 at 4021.598 kb on + strand, within ECD_03808 at 4021.637 kb on + strand at 4021.642 kb on - strand at 4021.656 kb on - strand at 4021.691 kb on - strand at 4021.734 kb on + strand, within ECD_03809 at 4021.734 kb on + strand, within ECD_03809 at 4021.785 kb on + strand, within ECD_03809 at 4021.943 kb on + strand, within ECD_03809 at 4021.948 kb on + strand, within ECD_03809 at 4021.948 kb on + strand, within ECD_03809 at 4021.949 kb on - strand, within ECD_03809 at 4021.949 kb on - strand, within ECD_03809 at 4021.949 kb on - strand, within ECD_03809 at 4021.962 kb on - strand, within ECD_03809 at 4022.002 kb on + strand, within ECD_03809 at 4022.014 kb on + strand, within ECD_03809 at 4022.015 kb on - strand, within ECD_03809 at 4022.033 kb on + strand, within ECD_03809 at 4022.034 kb on - strand, within ECD_03809 at 4022.034 kb on - strand, within ECD_03809 at 4022.050 kb on - strand, within ECD_03809 at 4022.069 kb on - strand, within ECD_03809 at 4022.069 kb on - strand, within ECD_03809 at 4022.087 kb on - strand, within ECD_03809 at 4022.122 kb on - strand, within ECD_03809 at 4022.171 kb on - strand, within ECD_03809 at 4022.171 kb on - strand, within ECD_03809
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnA remove 4,020,056 - ECD_03805 0.86 +0.5 4,020,105 - -0.2 4,020,121 + -0.5 4,020,122 - -1.8 4,020,143 + +0.5 4,020,154 - +1.1 4,020,177 + +0.4 4,020,234 + +0.0 4,020,234 + -1.7 4,020,234 + -0.5 4,020,234 + +1.5 4,020,234 + +1.3 4,020,234 + -0.0 4,020,234 + +0.0 4,020,235 - -0.3 4,020,235 - -0.3 4,020,235 - +0.2 4,020,235 - -0.8 4,020,244 + -1.5 4,020,245 - +0.5 4,020,245 - +0.4 4,020,245 - +0.5 4,020,245 - +0.5 4,020,256 + -0.6 4,020,694 + -0.4 4,020,719 + +0.7 4,020,811 + -0.6 4,020,812 - +0.4 4,020,875 + -0.4 4,020,875 + -0.2 4,020,875 + +0.4 4,020,876 - +0.9 4,020,888 + +0.4 4,020,902 + +0.1 4,020,915 + -0.7 4,020,919 - ECD_03807 0.10 -0.7 4,020,966 + ECD_03807 0.26 -0.3 4,020,966 + ECD_03807 0.26 +0.2 4,020,967 - ECD_03807 0.26 +0.4 4,021,081 + ECD_03807 0.64 -0.6 4,021,082 - ECD_03807 0.64 -1.5 4,021,084 - ECD_03807 0.65 -0.1 4,021,156 - ECD_03807 0.89 +0.6 4,021,156 - ECD_03807 0.89 -0.8 4,021,166 + +0.1 4,021,210 + +0.2 4,021,210 + +0.3 4,021,210 + -0.4 4,021,211 - -0.8 4,021,221 + +0.0 4,021,221 + +0.1 4,021,222 - -0.3 4,021,222 - +0.8 4,021,223 + -0.0 4,021,277 + ECD_03808 0.14 +0.6 4,021,322 - ECD_03808 0.25 +0.5 4,021,329 - ECD_03808 0.27 +0.4 4,021,342 + ECD_03808 0.30 +0.5 4,021,385 + ECD_03808 0.40 +0.2 4,021,386 - ECD_03808 0.40 +0.1 4,021,425 + ECD_03808 0.49 -0.0 4,021,426 - ECD_03808 0.49 -0.0 4,021,428 - ECD_03808 0.50 -0.5 4,021,428 - ECD_03808 0.50 +0.6 4,021,560 - ECD_03808 0.80 -1.1 4,021,598 + ECD_03808 0.89 -1.5 4,021,598 + ECD_03808 0.89 -0.3 4,021,598 + ECD_03808 0.89 -0.1 4,021,637 + -0.3 4,021,642 - +0.3 4,021,656 - -0.2 4,021,691 - -0.9 4,021,734 + ECD_03809 0.12 -1.3 4,021,734 + ECD_03809 0.12 +0.2 4,021,785 + ECD_03809 0.18 +0.0 4,021,943 + ECD_03809 0.39 +1.1 4,021,948 + ECD_03809 0.40 +1.5 4,021,948 + ECD_03809 0.40 -0.9 4,021,949 - ECD_03809 0.40 -1.0 4,021,949 - ECD_03809 0.40 -0.4 4,021,949 - ECD_03809 0.40 +0.8 4,021,962 - ECD_03809 0.42 +0.1 4,022,002 + ECD_03809 0.47 -0.4 4,022,014 + ECD_03809 0.49 -0.4 4,022,015 - ECD_03809 0.49 +0.3 4,022,033 + ECD_03809 0.52 +0.1 4,022,034 - ECD_03809 0.52 -0.0 4,022,034 - ECD_03809 0.52 +0.5 4,022,050 - ECD_03809 0.54 +0.6 4,022,069 - ECD_03809 0.56 +1.0 4,022,069 - ECD_03809 0.56 +0.0 4,022,087 - ECD_03809 0.59 -0.2 4,022,122 - ECD_03809 0.63 +0.5 4,022,171 - ECD_03809 0.70 +0.8 4,022,171 - ECD_03809 0.70 +0.6
Or see this region's nucleotide sequence