Strain Fitness in Escherichia coli BL21 around ECD_03125

Experiment: Control_TnA

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03124 and ECD_03125 are separated by 252 nucleotidesECD_03125 and ECD_03126 are separated by 538 nucleotides ECD_03124: ECD_03124 - multidrug efflux system protein, at 3,276,189 to 3,279,293 _03124 ECD_03125: ECD_03125 - putative outer membrane protein, at 3,279,546 to 3,279,767 _03125 ECD_03126: ECD_03126 - putative amino-acid transporter subunit, at 3,280,306 to 3,281,223 _03126 Position (kb) 3279 3280Strain fitness (log2 ratio) -2 -1 0 1at 3278.553 kb on + strand, within ECD_03124at 3278.616 kb on + strand, within ECD_03124at 3278.616 kb on + strand, within ECD_03124at 3278.616 kb on + strand, within ECD_03124at 3278.616 kb on + strand, within ECD_03124at 3278.617 kb on - strand, within ECD_03124at 3278.617 kb on - strand, within ECD_03124at 3278.617 kb on - strand, within ECD_03124at 3278.768 kb on + strand, within ECD_03124at 3278.859 kb on + strand, within ECD_03124at 3278.860 kb on - strand, within ECD_03124at 3278.888 kb on + strand, within ECD_03124at 3278.961 kb on + strand, within ECD_03124at 3278.962 kb on - strand, within ECD_03124at 3278.962 kb on - strand, within ECD_03124at 3279.088 kb on + strandat 3279.088 kb on + strandat 3279.089 kb on - strandat 3279.089 kb on - strandat 3279.089 kb on - strandat 3279.092 kb on + strandat 3279.092 kb on + strandat 3279.092 kb on + strandat 3279.092 kb on + strandat 3279.092 kb on + strandat 3279.093 kb on - strandat 3279.093 kb on - strandat 3279.093 kb on - strandat 3279.093 kb on - strandat 3279.131 kb on + strandat 3279.156 kb on - strandat 3279.497 kb on + strandat 3279.506 kb on + strandat 3279.663 kb on - strand, within ECD_03125at 3279.811 kb on - strandat 3279.817 kb on - strandat 3279.821 kb on - strandat 3279.850 kb on + strandat 3279.866 kb on + strandat 3280.142 kb on + strandat 3280.165 kb on + strandat 3280.168 kb on - strandat 3280.197 kb on + strandat 3280.386 kb on + strandat 3280.438 kb on + strand, within ECD_03126at 3280.506 kb on + strand, within ECD_03126at 3280.555 kb on - strand, within ECD_03126at 3280.567 kb on + strand, within ECD_03126at 3280.610 kb on + strand, within ECD_03126at 3280.704 kb on + strand, within ECD_03126at 3280.711 kb on + strand, within ECD_03126at 3280.711 kb on + strand, within ECD_03126at 3280.711 kb on + strand, within ECD_03126

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnA
remove
3,278,553 + ECD_03124 0.76 -1.0
3,278,616 + ECD_03124 0.78 -0.6
3,278,616 + ECD_03124 0.78 +0.1
3,278,616 + ECD_03124 0.78 -0.6
3,278,616 + ECD_03124 0.78 -1.0
3,278,617 - ECD_03124 0.78 -0.4
3,278,617 - ECD_03124 0.78 +0.3
3,278,617 - ECD_03124 0.78 -0.6
3,278,768 + ECD_03124 0.83 -1.8
3,278,859 + ECD_03124 0.86 -0.1
3,278,860 - ECD_03124 0.86 -1.9
3,278,888 + ECD_03124 0.87 -0.6
3,278,961 + ECD_03124 0.89 +0.2
3,278,962 - ECD_03124 0.89 -0.6
3,278,962 - ECD_03124 0.89 +0.1
3,279,088 + -0.7
3,279,088 + +0.1
3,279,089 - -1.0
3,279,089 - +0.8
3,279,089 - +0.9
3,279,092 + +0.0
3,279,092 + -0.3
3,279,092 + -0.2
3,279,092 + -0.7
3,279,092 + +0.4
3,279,093 - +0.8
3,279,093 - +0.4
3,279,093 - -1.4
3,279,093 - -0.1
3,279,131 + -0.3
3,279,156 - -1.2
3,279,497 + -0.5
3,279,506 + -0.7
3,279,663 - ECD_03125 0.53 +0.2
3,279,811 - -0.3
3,279,817 - +0.5
3,279,821 - +1.3
3,279,850 + -0.6
3,279,866 + +0.3
3,280,142 + +0.5
3,280,165 + +0.0
3,280,168 - -0.9
3,280,197 + +0.5
3,280,386 + +1.2
3,280,438 + ECD_03126 0.14 -0.3
3,280,506 + ECD_03126 0.22 -1.4
3,280,555 - ECD_03126 0.27 +0.5
3,280,567 + ECD_03126 0.28 +0.9
3,280,610 + ECD_03126 0.33 -0.4
3,280,704 + ECD_03126 0.43 +0.4
3,280,711 + ECD_03126 0.44 -0.2
3,280,711 + ECD_03126 0.44 +0.6
3,280,711 + ECD_03126 0.44 +1.2

Or see this region's nucleotide sequence