Experiment: Control_TnA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02573 and ECD_02574 overlap by 4 nucleotides ECD_02574 and ECD_02575 are separated by 124 nucleotides ECD_02575 and ECD_02576 are separated by 211 nucleotides ECD_02576 and ECD_02577 are separated by 3 nucleotides
ECD_02573: ECD_02573 - hydrogenase 3, membrane subunit, at 2,687,382 to 2,689,208
_02573
ECD_02574: ECD_02574 - hydrogenase 3, Fe-S subunit, at 2,689,205 to 2,689,816
_02574
ECD_02575: ECD_02575 - regulator of the transcriptional regulator FhlA, at 2,689,941 to 2,690,402
_02575
ECD_02576: ECD_02576 - protein involved in nickel insertion into hydrogenases 3, at 2,690,614 to 2,690,964
_02576
ECD_02577: ECD_02577 - GTP hydrolase, at 2,690,968 to 2,691,840
_02577
Position (kb)
2689
2690
2691 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2688.963 kb on - strand, within ECD_02573 at 2689.003 kb on + strand, within ECD_02573 at 2689.003 kb on + strand, within ECD_02573 at 2689.003 kb on + strand, within ECD_02573 at 2689.003 kb on + strand, within ECD_02573 at 2689.004 kb on - strand, within ECD_02573 at 2689.004 kb on - strand, within ECD_02573 at 2689.004 kb on - strand, within ECD_02573 at 2689.004 kb on - strand, within ECD_02573 at 2689.004 kb on - strand, within ECD_02573 at 2689.004 kb on - strand, within ECD_02573 at 2689.004 kb on - strand, within ECD_02573 at 2689.004 kb on - strand, within ECD_02573 at 2689.004 kb on - strand, within ECD_02573 at 2689.004 kb on - strand, within ECD_02573 at 2689.004 kb on - strand, within ECD_02573 at 2689.050 kb on + strand at 2689.050 kb on + strand at 2689.051 kb on - strand at 2689.051 kb on - strand at 2689.051 kb on - strand at 2689.051 kb on - strand at 2689.051 kb on - strand at 2689.075 kb on + strand at 2689.075 kb on + strand at 2689.075 kb on + strand at 2689.076 kb on - strand at 2689.076 kb on - strand at 2689.076 kb on - strand at 2689.076 kb on - strand at 2689.076 kb on - strand at 2689.076 kb on - strand at 2689.076 kb on - strand at 2689.083 kb on - strand at 2689.083 kb on - strand at 2689.119 kb on + strand at 2689.211 kb on - strand at 2689.211 kb on - strand at 2689.283 kb on - strand, within ECD_02574 at 2689.283 kb on - strand, within ECD_02574 at 2689.283 kb on - strand, within ECD_02574 at 2689.334 kb on - strand, within ECD_02574 at 2689.378 kb on + strand, within ECD_02574 at 2689.378 kb on + strand, within ECD_02574 at 2689.378 kb on + strand, within ECD_02574 at 2689.378 kb on + strand, within ECD_02574 at 2689.378 kb on + strand, within ECD_02574 at 2689.378 kb on + strand, within ECD_02574 at 2689.378 kb on + strand, within ECD_02574 at 2689.378 kb on + strand, within ECD_02574 at 2689.379 kb on - strand, within ECD_02574 at 2689.379 kb on - strand, within ECD_02574 at 2689.379 kb on - strand, within ECD_02574 at 2689.379 kb on - strand, within ECD_02574 at 2689.379 kb on - strand, within ECD_02574 at 2689.379 kb on - strand, within ECD_02574 at 2689.412 kb on - strand, within ECD_02574 at 2689.568 kb on + strand, within ECD_02574 at 2689.569 kb on - strand, within ECD_02574 at 2689.803 kb on - strand at 2689.803 kb on - strand at 2689.912 kb on - strand at 2689.912 kb on - strand at 2690.003 kb on + strand, within ECD_02575 at 2690.011 kb on + strand, within ECD_02575 at 2690.011 kb on + strand, within ECD_02575 at 2690.011 kb on + strand, within ECD_02575 at 2690.011 kb on + strand, within ECD_02575 at 2690.011 kb on + strand, within ECD_02575 at 2690.011 kb on + strand, within ECD_02575 at 2690.011 kb on + strand, within ECD_02575 at 2690.012 kb on - strand, within ECD_02575 at 2690.012 kb on - strand, within ECD_02575 at 2690.012 kb on - strand, within ECD_02575 at 2690.012 kb on - strand, within ECD_02575 at 2690.012 kb on - strand, within ECD_02575 at 2690.012 kb on - strand, within ECD_02575 at 2690.012 kb on - strand, within ECD_02575 at 2690.012 kb on - strand, within ECD_02575 at 2690.012 kb on - strand, within ECD_02575 at 2690.012 kb on - strand, within ECD_02575 at 2690.013 kb on + strand, within ECD_02575 at 2690.013 kb on + strand, within ECD_02575 at 2690.013 kb on + strand, within ECD_02575 at 2690.013 kb on + strand, within ECD_02575 at 2690.013 kb on + strand, within ECD_02575 at 2690.013 kb on + strand, within ECD_02575 at 2690.014 kb on - strand, within ECD_02575 at 2690.014 kb on - strand, within ECD_02575 at 2690.014 kb on - strand, within ECD_02575 at 2690.014 kb on - strand, within ECD_02575 at 2690.014 kb on - strand, within ECD_02575 at 2690.014 kb on - strand, within ECD_02575 at 2690.014 kb on - strand, within ECD_02575 at 2690.014 kb on - strand, within ECD_02575 at 2690.014 kb on - strand, within ECD_02575 at 2690.014 kb on - strand, within ECD_02575 at 2690.023 kb on + strand, within ECD_02575 at 2690.047 kb on + strand, within ECD_02575 at 2690.047 kb on + strand, within ECD_02575 at 2690.047 kb on + strand, within ECD_02575 at 2690.047 kb on + strand, within ECD_02575 at 2690.047 kb on + strand, within ECD_02575 at 2690.048 kb on - strand, within ECD_02575 at 2690.048 kb on - strand, within ECD_02575 at 2690.048 kb on - strand, within ECD_02575 at 2690.048 kb on - strand, within ECD_02575 at 2690.048 kb on - strand, within ECD_02575 at 2690.048 kb on - strand, within ECD_02575 at 2690.164 kb on + strand, within ECD_02575 at 2690.164 kb on + strand, within ECD_02575 at 2690.165 kb on - strand, within ECD_02575 at 2690.165 kb on - strand, within ECD_02575 at 2690.165 kb on - strand, within ECD_02575 at 2690.165 kb on - strand, within ECD_02575 at 2690.165 kb on - strand, within ECD_02575 at 2690.165 kb on - strand, within ECD_02575 at 2690.165 kb on - strand, within ECD_02575 at 2690.165 kb on - strand, within ECD_02575 at 2690.167 kb on + strand, within ECD_02575 at 2690.167 kb on + strand, within ECD_02575 at 2690.168 kb on - strand, within ECD_02575 at 2690.168 kb on - strand, within ECD_02575 at 2690.179 kb on - strand, within ECD_02575 at 2690.187 kb on - strand, within ECD_02575 at 2690.209 kb on + strand, within ECD_02575 at 2690.209 kb on + strand, within ECD_02575 at 2690.209 kb on + strand, within ECD_02575 at 2690.210 kb on - strand, within ECD_02575 at 2690.210 kb on - strand, within ECD_02575 at 2690.210 kb on - strand, within ECD_02575 at 2690.210 kb on - strand, within ECD_02575 at 2690.210 kb on - strand, within ECD_02575 at 2690.210 kb on - strand, within ECD_02575 at 2690.210 kb on - strand, within ECD_02575 at 2690.210 kb on - strand, within ECD_02575 at 2690.210 kb on - strand, within ECD_02575 at 2690.210 kb on - strand, within ECD_02575 at 2690.323 kb on + strand, within ECD_02575 at 2690.323 kb on + strand, within ECD_02575 at 2690.324 kb on - strand, within ECD_02575 at 2690.324 kb on - strand, within ECD_02575 at 2690.324 kb on - strand, within ECD_02575 at 2690.324 kb on - strand, within ECD_02575 at 2690.324 kb on - strand, within ECD_02575 at 2690.324 kb on - strand, within ECD_02575 at 2690.324 kb on - strand, within ECD_02575 at 2690.343 kb on + strand, within ECD_02575 at 2690.369 kb on - strand at 2690.369 kb on - strand at 2690.369 kb on - strand at 2690.369 kb on - strand at 2690.386 kb on - strand at 2690.396 kb on + strand at 2690.396 kb on + strand at 2690.396 kb on + strand at 2690.397 kb on - strand at 2690.397 kb on - strand at 2690.586 kb on + strand at 2690.596 kb on + strand at 2690.596 kb on + strand at 2690.596 kb on + strand at 2690.596 kb on + strand at 2690.596 kb on + strand at 2690.596 kb on + strand at 2690.596 kb on + strand at 2690.597 kb on - strand at 2690.597 kb on - strand at 2690.597 kb on - strand at 2690.597 kb on - strand at 2690.597 kb on - strand at 2690.600 kb on + strand at 2690.624 kb on + strand at 2690.624 kb on + strand at 2690.691 kb on - strand, within ECD_02576 at 2690.691 kb on - strand, within ECD_02576 at 2690.793 kb on + strand, within ECD_02576 at 2690.793 kb on + strand, within ECD_02576 at 2690.848 kb on + strand, within ECD_02576 at 2690.848 kb on + strand, within ECD_02576 at 2690.848 kb on + strand, within ECD_02576 at 2690.848 kb on + strand, within ECD_02576 at 2690.848 kb on + strand, within ECD_02576 at 2690.848 kb on + strand, within ECD_02576 at 2690.848 kb on + strand, within ECD_02576 at 2690.848 kb on + strand, within ECD_02576 at 2690.848 kb on + strand, within ECD_02576 at 2690.848 kb on + strand, within ECD_02576 at 2690.849 kb on - strand, within ECD_02576 at 2690.930 kb on + strand at 2690.931 kb on - strand at 2690.946 kb on - strand at 2690.946 kb on - strand at 2690.951 kb on + strand at 2690.951 kb on + strand at 2690.951 kb on + strand at 2690.951 kb on + strand at 2690.951 kb on + strand at 2690.951 kb on + strand at 2690.952 kb on - strand at 2690.952 kb on - strand at 2690.952 kb on - strand at 2690.973 kb on + strand at 2690.973 kb on + strand at 2690.973 kb on + strand at 2690.973 kb on + strand at 2690.974 kb on - strand at 2690.974 kb on - strand at 2690.974 kb on - strand at 2690.974 kb on - strand at 2690.974 kb on - strand at 2690.974 kb on - strand at 2691.004 kb on + strand at 2691.004 kb on + strand at 2691.004 kb on + strand at 2691.004 kb on + strand at 2691.004 kb on + strand at 2691.004 kb on + strand at 2691.004 kb on + strand at 2691.005 kb on - strand at 2691.005 kb on - strand at 2691.005 kb on - strand at 2691.005 kb on - strand at 2691.005 kb on - strand at 2691.005 kb on - strand at 2691.005 kb on - strand at 2691.005 kb on - strand at 2691.005 kb on - strand at 2691.025 kb on - strand at 2691.025 kb on - strand at 2691.045 kb on + strand at 2691.096 kb on + strand, within ECD_02577 at 2691.096 kb on + strand, within ECD_02577 at 2691.145 kb on + strand, within ECD_02577 at 2691.342 kb on - strand, within ECD_02577 at 2691.375 kb on + strand, within ECD_02577 at 2691.375 kb on + strand, within ECD_02577 at 2691.376 kb on - strand, within ECD_02577 at 2691.376 kb on - strand, within ECD_02577
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnA remove 2,688,963 - ECD_02573 0.87 -1.3 2,689,003 + ECD_02573 0.89 -0.6 2,689,003 + ECD_02573 0.89 +1.0 2,689,003 + ECD_02573 0.89 -1.2 2,689,003 + ECD_02573 0.89 -0.7 2,689,004 - ECD_02573 0.89 +0.1 2,689,004 - ECD_02573 0.89 +0.2 2,689,004 - ECD_02573 0.89 -0.5 2,689,004 - ECD_02573 0.89 +1.0 2,689,004 - ECD_02573 0.89 +0.2 2,689,004 - ECD_02573 0.89 +0.7 2,689,004 - ECD_02573 0.89 -1.6 2,689,004 - ECD_02573 0.89 -1.3 2,689,004 - ECD_02573 0.89 -0.2 2,689,004 - ECD_02573 0.89 +0.8 2,689,004 - ECD_02573 0.89 -0.8 2,689,050 + +1.0 2,689,050 + -0.4 2,689,051 - -0.5 2,689,051 - -0.4 2,689,051 - -0.0 2,689,051 - -2.7 2,689,051 - -0.8 2,689,075 + -0.1 2,689,075 + -0.2 2,689,075 + +0.0 2,689,076 - +0.4 2,689,076 - +0.9 2,689,076 - -0.3 2,689,076 - -1.2 2,689,076 - -0.7 2,689,076 - -0.2 2,689,076 - +1.4 2,689,083 - -0.1 2,689,083 - +0.9 2,689,119 + -0.9 2,689,211 - -0.5 2,689,211 - -1.3 2,689,283 - ECD_02574 0.13 -0.0 2,689,283 - ECD_02574 0.13 -0.2 2,689,283 - ECD_02574 0.13 -0.5 2,689,334 - ECD_02574 0.21 -0.0 2,689,378 + ECD_02574 0.28 -1.7 2,689,378 + ECD_02574 0.28 +0.0 2,689,378 + ECD_02574 0.28 -0.7 2,689,378 + ECD_02574 0.28 +1.3 2,689,378 + ECD_02574 0.28 -0.1 2,689,378 + ECD_02574 0.28 -1.2 2,689,378 + ECD_02574 0.28 +0.2 2,689,378 + ECD_02574 0.28 +0.4 2,689,379 - ECD_02574 0.28 +1.2 2,689,379 - ECD_02574 0.28 +1.0 2,689,379 - ECD_02574 0.28 -0.8 2,689,379 - ECD_02574 0.28 +1.3 2,689,379 - ECD_02574 0.28 -0.0 2,689,379 - ECD_02574 0.28 -0.1 2,689,412 - ECD_02574 0.34 +0.6 2,689,568 + ECD_02574 0.59 +0.0 2,689,569 - ECD_02574 0.59 +0.0 2,689,803 - -0.5 2,689,803 - -1.1 2,689,912 - +0.3 2,689,912 - -0.1 2,690,003 + ECD_02575 0.13 -0.1 2,690,011 + ECD_02575 0.15 +0.6 2,690,011 + ECD_02575 0.15 +0.1 2,690,011 + ECD_02575 0.15 +0.5 2,690,011 + ECD_02575 0.15 -0.8 2,690,011 + ECD_02575 0.15 -0.4 2,690,011 + ECD_02575 0.15 -1.1 2,690,011 + ECD_02575 0.15 -0.1 2,690,012 - ECD_02575 0.15 -0.4 2,690,012 - ECD_02575 0.15 -1.4 2,690,012 - ECD_02575 0.15 +1.1 2,690,012 - ECD_02575 0.15 -0.3 2,690,012 - ECD_02575 0.15 +0.2 2,690,012 - ECD_02575 0.15 +0.2 2,690,012 - ECD_02575 0.15 -0.8 2,690,012 - ECD_02575 0.15 +0.4 2,690,012 - ECD_02575 0.15 +0.2 2,690,012 - ECD_02575 0.15 -1.4 2,690,013 + ECD_02575 0.16 +0.2 2,690,013 + ECD_02575 0.16 -1.5 2,690,013 + ECD_02575 0.16 +0.2 2,690,013 + ECD_02575 0.16 -0.0 2,690,013 + ECD_02575 0.16 +0.0 2,690,013 + ECD_02575 0.16 +0.1 2,690,014 - ECD_02575 0.16 -0.2 2,690,014 - ECD_02575 0.16 -0.1 2,690,014 - ECD_02575 0.16 +1.0 2,690,014 - ECD_02575 0.16 -0.4 2,690,014 - ECD_02575 0.16 +0.8 2,690,014 - ECD_02575 0.16 -0.4 2,690,014 - ECD_02575 0.16 -0.6 2,690,014 - ECD_02575 0.16 +0.6 2,690,014 - ECD_02575 0.16 +0.0 2,690,014 - ECD_02575 0.16 -0.1 2,690,023 + ECD_02575 0.18 -0.4 2,690,047 + ECD_02575 0.23 -0.5 2,690,047 + ECD_02575 0.23 +0.1 2,690,047 + ECD_02575 0.23 +0.1 2,690,047 + ECD_02575 0.23 -0.8 2,690,047 + ECD_02575 0.23 +0.3 2,690,048 - ECD_02575 0.23 -0.7 2,690,048 - ECD_02575 0.23 -0.6 2,690,048 - ECD_02575 0.23 +1.3 2,690,048 - ECD_02575 0.23 -0.2 2,690,048 - ECD_02575 0.23 -0.5 2,690,048 - ECD_02575 0.23 +0.2 2,690,164 + ECD_02575 0.48 +0.1 2,690,164 + ECD_02575 0.48 -0.2 2,690,165 - ECD_02575 0.48 +0.9 2,690,165 - ECD_02575 0.48 +0.4 2,690,165 - ECD_02575 0.48 +0.5 2,690,165 - ECD_02575 0.48 -0.6 2,690,165 - ECD_02575 0.48 -0.7 2,690,165 - ECD_02575 0.48 +1.0 2,690,165 - ECD_02575 0.48 -0.3 2,690,165 - ECD_02575 0.48 +0.2 2,690,167 + ECD_02575 0.49 -1.1 2,690,167 + ECD_02575 0.49 -0.6 2,690,168 - ECD_02575 0.49 -1.2 2,690,168 - ECD_02575 0.49 +0.9 2,690,179 - ECD_02575 0.52 -1.5 2,690,187 - ECD_02575 0.53 +0.1 2,690,209 + ECD_02575 0.58 +0.7 2,690,209 + ECD_02575 0.58 -0.2 2,690,209 + ECD_02575 0.58 +0.8 2,690,210 - ECD_02575 0.58 -0.4 2,690,210 - ECD_02575 0.58 -0.7 2,690,210 - ECD_02575 0.58 -0.8 2,690,210 - ECD_02575 0.58 +0.8 2,690,210 - ECD_02575 0.58 -0.5 2,690,210 - ECD_02575 0.58 -0.3 2,690,210 - ECD_02575 0.58 -0.8 2,690,210 - ECD_02575 0.58 +0.1 2,690,210 - ECD_02575 0.58 +1.9 2,690,210 - ECD_02575 0.58 -0.0 2,690,323 + ECD_02575 0.83 -1.2 2,690,323 + ECD_02575 0.83 +1.0 2,690,324 - ECD_02575 0.83 +0.0 2,690,324 - ECD_02575 0.83 -0.7 2,690,324 - ECD_02575 0.83 -0.3 2,690,324 - ECD_02575 0.83 +0.9 2,690,324 - ECD_02575 0.83 +0.5 2,690,324 - ECD_02575 0.83 -0.1 2,690,324 - ECD_02575 0.83 -0.1 2,690,343 + ECD_02575 0.87 +1.2 2,690,369 - +0.9 2,690,369 - +0.6 2,690,369 - -2.1 2,690,369 - -0.0 2,690,386 - -1.0 2,690,396 + -1.4 2,690,396 + +0.3 2,690,396 + +0.7 2,690,397 - -0.3 2,690,397 - -0.7 2,690,586 + -1.6 2,690,596 + +0.9 2,690,596 + -0.0 2,690,596 + +0.7 2,690,596 + +0.4 2,690,596 + -0.9 2,690,596 + +0.8 2,690,596 + -0.1 2,690,597 - -0.1 2,690,597 - +0.2 2,690,597 - -0.8 2,690,597 - +0.4 2,690,597 - +0.0 2,690,600 + +0.2 2,690,624 + -0.3 2,690,624 + +0.5 2,690,691 - ECD_02576 0.22 +0.9 2,690,691 - ECD_02576 0.22 -1.1 2,690,793 + ECD_02576 0.51 -0.2 2,690,793 + ECD_02576 0.51 +0.8 2,690,848 + ECD_02576 0.67 -0.2 2,690,848 + ECD_02576 0.67 -0.2 2,690,848 + ECD_02576 0.67 +0.6 2,690,848 + ECD_02576 0.67 +0.3 2,690,848 + ECD_02576 0.67 +0.6 2,690,848 + ECD_02576 0.67 -1.6 2,690,848 + ECD_02576 0.67 -2.3 2,690,848 + ECD_02576 0.67 +1.6 2,690,848 + ECD_02576 0.67 +0.4 2,690,848 + ECD_02576 0.67 -1.2 2,690,849 - ECD_02576 0.67 -0.2 2,690,930 + -0.6 2,690,931 - +1.0 2,690,946 - +0.7 2,690,946 - +1.0 2,690,951 + -0.6 2,690,951 + -0.6 2,690,951 + -1.0 2,690,951 + -0.5 2,690,951 + -1.0 2,690,951 + -1.1 2,690,952 - -0.3 2,690,952 - +0.8 2,690,952 - -0.5 2,690,973 + +0.1 2,690,973 + +0.9 2,690,973 + +0.3 2,690,973 + +0.4 2,690,974 - +1.0 2,690,974 - -1.1 2,690,974 - +0.9 2,690,974 - -0.2 2,690,974 - +0.2 2,690,974 - -0.0 2,691,004 + +0.3 2,691,004 + -0.8 2,691,004 + +0.6 2,691,004 + -0.2 2,691,004 + -2.7 2,691,004 + -1.4 2,691,004 + -1.2 2,691,005 - +1.2 2,691,005 - -1.8 2,691,005 - +0.6 2,691,005 - -0.2 2,691,005 - +1.3 2,691,005 - -0.0 2,691,005 - -0.7 2,691,005 - -0.2 2,691,005 - +0.9 2,691,025 - -0.4 2,691,025 - -0.6 2,691,045 + -0.2 2,691,096 + ECD_02577 0.15 -1.6 2,691,096 + ECD_02577 0.15 -1.2 2,691,145 + ECD_02577 0.20 +0.3 2,691,342 - ECD_02577 0.43 -1.0 2,691,375 + ECD_02577 0.47 -0.5 2,691,375 + ECD_02577 0.47 -0.2 2,691,376 - ECD_02577 0.47 +0.9 2,691,376 - ECD_02577 0.47 -2.6
Or see this region's nucleotide sequence