Experiment: Control_TnA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02427 and ECD_02428 overlap by 9 nucleotides ECD_02428 and ECD_02429 are separated by 159 nucleotides
ECD_02427: ECD_02427 - stationary phase inducible protein, at 2,531,240 to 2,532,520
_02427
ECD_02428: ECD_02428 - putative 3-phenylpropionic transporter, at 2,532,512 to 2,533,651
_02428
ECD_02429: ECD_02429 - hca operon transcriptional regulator, at 2,533,811 to 2,534,701
_02429
Position (kb)
2532
2533
2534 Strain fitness (log2 ratio)
-1
0
1 at 2531.610 kb on - strand, within ECD_02427 at 2531.625 kb on + strand, within ECD_02427 at 2531.626 kb on - strand, within ECD_02427 at 2531.626 kb on - strand, within ECD_02427 at 2531.702 kb on + strand, within ECD_02427 at 2531.711 kb on + strand, within ECD_02427 at 2532.015 kb on + strand, within ECD_02427 at 2532.029 kb on + strand, within ECD_02427 at 2532.029 kb on + strand, within ECD_02427 at 2532.030 kb on - strand, within ECD_02427 at 2532.030 kb on - strand, within ECD_02427 at 2532.030 kb on - strand, within ECD_02427 at 2532.030 kb on - strand, within ECD_02427 at 2532.085 kb on + strand, within ECD_02427 at 2532.114 kb on - strand, within ECD_02427 at 2532.283 kb on + strand, within ECD_02427 at 2532.352 kb on + strand, within ECD_02427 at 2532.353 kb on - strand, within ECD_02427 at 2532.353 kb on - strand, within ECD_02427 at 2532.416 kb on + strand at 2532.416 kb on + strand at 2532.418 kb on + strand at 2532.419 kb on - strand at 2532.597 kb on + strand at 2532.709 kb on + strand, within ECD_02428 at 2532.709 kb on + strand, within ECD_02428 at 2532.771 kb on - strand, within ECD_02428 at 2532.860 kb on - strand, within ECD_02428 at 2532.860 kb on - strand, within ECD_02428 at 2532.860 kb on - strand, within ECD_02428 at 2532.930 kb on + strand, within ECD_02428 at 2533.196 kb on - strand, within ECD_02428 at 2533.196 kb on - strand, within ECD_02428 at 2533.343 kb on - strand, within ECD_02428 at 2533.373 kb on + strand, within ECD_02428 at 2533.374 kb on - strand, within ECD_02428 at 2533.746 kb on + strand at 2533.801 kb on + strand at 2533.812 kb on + strand at 2533.902 kb on - strand, within ECD_02429 at 2533.971 kb on + strand, within ECD_02429 at 2533.971 kb on + strand, within ECD_02429 at 2534.029 kb on + strand, within ECD_02429 at 2534.181 kb on - strand, within ECD_02429 at 2534.181 kb on - strand, within ECD_02429 at 2534.325 kb on - strand, within ECD_02429 at 2534.391 kb on - strand, within ECD_02429 at 2534.607 kb on - strand, within ECD_02429
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnA remove 2,531,610 - ECD_02427 0.29 -0.0 2,531,625 + ECD_02427 0.30 +0.2 2,531,626 - ECD_02427 0.30 +0.4 2,531,626 - ECD_02427 0.30 +0.7 2,531,702 + ECD_02427 0.36 -1.3 2,531,711 + ECD_02427 0.37 +1.6 2,532,015 + ECD_02427 0.60 +0.5 2,532,029 + ECD_02427 0.62 -0.1 2,532,029 + ECD_02427 0.62 -0.0 2,532,030 - ECD_02427 0.62 -0.5 2,532,030 - ECD_02427 0.62 -0.1 2,532,030 - ECD_02427 0.62 +0.1 2,532,030 - ECD_02427 0.62 -0.6 2,532,085 + ECD_02427 0.66 -0.4 2,532,114 - ECD_02427 0.68 -0.9 2,532,283 + ECD_02427 0.81 +0.5 2,532,352 + ECD_02427 0.87 +0.7 2,532,353 - ECD_02427 0.87 +0.2 2,532,353 - ECD_02427 0.87 +0.3 2,532,416 + +0.1 2,532,416 + +0.1 2,532,418 + -0.2 2,532,419 - +0.4 2,532,597 + -1.4 2,532,709 + ECD_02428 0.17 -0.1 2,532,709 + ECD_02428 0.17 -1.3 2,532,771 - ECD_02428 0.23 -1.3 2,532,860 - ECD_02428 0.31 +0.4 2,532,860 - ECD_02428 0.31 +0.1 2,532,860 - ECD_02428 0.31 +1.5 2,532,930 + ECD_02428 0.37 -0.9 2,533,196 - ECD_02428 0.60 -1.0 2,533,196 - ECD_02428 0.60 -0.1 2,533,343 - ECD_02428 0.73 -0.9 2,533,373 + ECD_02428 0.76 +0.3 2,533,374 - ECD_02428 0.76 -0.8 2,533,746 + +0.1 2,533,801 + -0.5 2,533,812 + +0.3 2,533,902 - ECD_02429 0.10 -1.3 2,533,971 + ECD_02429 0.18 +0.7 2,533,971 + ECD_02429 0.18 +0.0 2,534,029 + ECD_02429 0.24 +0.5 2,534,181 - ECD_02429 0.42 -0.5 2,534,181 - ECD_02429 0.42 +1.1 2,534,325 - ECD_02429 0.58 +0.2 2,534,391 - ECD_02429 0.65 +1.4 2,534,607 - ECD_02429 0.89 -0.4
Or see this region's nucleotide sequence