Strain Fitness in Escherichia coli BL21 around ECD_02428

Experiment: Control_TnA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02427 and ECD_02428 overlap by 9 nucleotidesECD_02428 and ECD_02429 are separated by 159 nucleotides ECD_02427: ECD_02427 - stationary phase inducible protein, at 2,531,240 to 2,532,520 _02427 ECD_02428: ECD_02428 - putative 3-phenylpropionic transporter, at 2,532,512 to 2,533,651 _02428 ECD_02429: ECD_02429 - hca operon transcriptional regulator, at 2,533,811 to 2,534,701 _02429 Position (kb) 2532 2533 2534Strain fitness (log2 ratio) -1 0 1at 2531.610 kb on - strand, within ECD_02427at 2531.625 kb on + strand, within ECD_02427at 2531.626 kb on - strand, within ECD_02427at 2531.626 kb on - strand, within ECD_02427at 2531.702 kb on + strand, within ECD_02427at 2531.711 kb on + strand, within ECD_02427at 2532.015 kb on + strand, within ECD_02427at 2532.029 kb on + strand, within ECD_02427at 2532.029 kb on + strand, within ECD_02427at 2532.030 kb on - strand, within ECD_02427at 2532.030 kb on - strand, within ECD_02427at 2532.030 kb on - strand, within ECD_02427at 2532.030 kb on - strand, within ECD_02427at 2532.085 kb on + strand, within ECD_02427at 2532.114 kb on - strand, within ECD_02427at 2532.283 kb on + strand, within ECD_02427at 2532.352 kb on + strand, within ECD_02427at 2532.353 kb on - strand, within ECD_02427at 2532.353 kb on - strand, within ECD_02427at 2532.416 kb on + strandat 2532.416 kb on + strandat 2532.418 kb on + strandat 2532.419 kb on - strandat 2532.597 kb on + strandat 2532.709 kb on + strand, within ECD_02428at 2532.709 kb on + strand, within ECD_02428at 2532.771 kb on - strand, within ECD_02428at 2532.860 kb on - strand, within ECD_02428at 2532.860 kb on - strand, within ECD_02428at 2532.860 kb on - strand, within ECD_02428at 2532.930 kb on + strand, within ECD_02428at 2533.196 kb on - strand, within ECD_02428at 2533.196 kb on - strand, within ECD_02428at 2533.343 kb on - strand, within ECD_02428at 2533.373 kb on + strand, within ECD_02428at 2533.374 kb on - strand, within ECD_02428at 2533.746 kb on + strandat 2533.801 kb on + strandat 2533.812 kb on + strandat 2533.902 kb on - strand, within ECD_02429at 2533.971 kb on + strand, within ECD_02429at 2533.971 kb on + strand, within ECD_02429at 2534.029 kb on + strand, within ECD_02429at 2534.181 kb on - strand, within ECD_02429at 2534.181 kb on - strand, within ECD_02429at 2534.325 kb on - strand, within ECD_02429at 2534.391 kb on - strand, within ECD_02429at 2534.607 kb on - strand, within ECD_02429

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnA
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2,531,610 - ECD_02427 0.29 -0.0
2,531,625 + ECD_02427 0.30 +0.2
2,531,626 - ECD_02427 0.30 +0.4
2,531,626 - ECD_02427 0.30 +0.7
2,531,702 + ECD_02427 0.36 -1.3
2,531,711 + ECD_02427 0.37 +1.6
2,532,015 + ECD_02427 0.60 +0.5
2,532,029 + ECD_02427 0.62 -0.1
2,532,029 + ECD_02427 0.62 -0.0
2,532,030 - ECD_02427 0.62 -0.5
2,532,030 - ECD_02427 0.62 -0.1
2,532,030 - ECD_02427 0.62 +0.1
2,532,030 - ECD_02427 0.62 -0.6
2,532,085 + ECD_02427 0.66 -0.4
2,532,114 - ECD_02427 0.68 -0.9
2,532,283 + ECD_02427 0.81 +0.5
2,532,352 + ECD_02427 0.87 +0.7
2,532,353 - ECD_02427 0.87 +0.2
2,532,353 - ECD_02427 0.87 +0.3
2,532,416 + +0.1
2,532,416 + +0.1
2,532,418 + -0.2
2,532,419 - +0.4
2,532,597 + -1.4
2,532,709 + ECD_02428 0.17 -0.1
2,532,709 + ECD_02428 0.17 -1.3
2,532,771 - ECD_02428 0.23 -1.3
2,532,860 - ECD_02428 0.31 +0.4
2,532,860 - ECD_02428 0.31 +0.1
2,532,860 - ECD_02428 0.31 +1.5
2,532,930 + ECD_02428 0.37 -0.9
2,533,196 - ECD_02428 0.60 -1.0
2,533,196 - ECD_02428 0.60 -0.1
2,533,343 - ECD_02428 0.73 -0.9
2,533,373 + ECD_02428 0.76 +0.3
2,533,374 - ECD_02428 0.76 -0.8
2,533,746 + +0.1
2,533,801 + -0.5
2,533,812 + +0.3
2,533,902 - ECD_02429 0.10 -1.3
2,533,971 + ECD_02429 0.18 +0.7
2,533,971 + ECD_02429 0.18 +0.0
2,534,029 + ECD_02429 0.24 +0.5
2,534,181 - ECD_02429 0.42 -0.5
2,534,181 - ECD_02429 0.42 +1.1
2,534,325 - ECD_02429 0.58 +0.2
2,534,391 - ECD_02429 0.65 +1.4
2,534,607 - ECD_02429 0.89 -0.4

Or see this region's nucleotide sequence