Experiment: Control_TnA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02142 and ECD_02143 are separated by 69 nucleotides ECD_02143 and ECD_02144 overlap by 82 nucleotides ECD_02144 and ECD_02145 are separated by 274 nucleotides
ECD_02142: ECD_02142 - outer membrane porin protein C, at 2,205,411 to 2,206,346
_02142
ECD_02143: ECD_02143 - IS1 protein InsB, at 2,206,416 to 2,206,919
_02143
ECD_02144: ECD_02144 - IS1 protein InsA, at 2,206,838 to 2,207,113
_02144
ECD_02145: ECD_02145 - hybrid sensory kinase in two-component regulatory system with RcsB and YojN, at 2,207,388 to 2,210,237
_02145
Position (kb)
2206
2207
2208 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2205.846 kb on - strand, within ECD_02142 at 2205.895 kb on + strand, within ECD_02142 at 2205.903 kb on - strand, within ECD_02142 at 2205.954 kb on - strand, within ECD_02142 at 2205.965 kb on + strand, within ECD_02142 at 2205.969 kb on - strand, within ECD_02142 at 2206.061 kb on - strand, within ECD_02142 at 2206.108 kb on + strand, within ECD_02142 at 2206.109 kb on - strand, within ECD_02142 at 2206.153 kb on - strand, within ECD_02142 at 2206.171 kb on + strand, within ECD_02142 at 2206.349 kb on - strand at 2207.180 kb on - strand at 2207.187 kb on - strand at 2207.224 kb on - strand at 2207.319 kb on + strand at 2207.423 kb on - strand at 2207.425 kb on - strand at 2207.425 kb on - strand at 2207.597 kb on + strand at 2207.598 kb on - strand at 2207.598 kb on - strand at 2207.598 kb on - strand at 2207.598 kb on - strand at 2207.598 kb on - strand at 2207.645 kb on + strand at 2207.646 kb on - strand at 2207.650 kb on - strand at 2207.774 kb on + strand, within ECD_02145 at 2207.893 kb on - strand, within ECD_02145 at 2207.983 kb on - strand, within ECD_02145 at 2207.994 kb on - strand, within ECD_02145 at 2208.031 kb on + strand, within ECD_02145 at 2208.031 kb on + strand, within ECD_02145 at 2208.032 kb on - strand, within ECD_02145
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnA remove 2,205,846 - ECD_02142 0.46 +1.5 2,205,895 + ECD_02142 0.52 -0.9 2,205,903 - ECD_02142 0.53 -0.6 2,205,954 - ECD_02142 0.58 -0.6 2,205,965 + ECD_02142 0.59 +0.4 2,205,969 - ECD_02142 0.60 +0.1 2,206,061 - ECD_02142 0.69 -1.3 2,206,108 + ECD_02142 0.74 -0.2 2,206,109 - ECD_02142 0.75 -0.4 2,206,153 - ECD_02142 0.79 +1.0 2,206,171 + ECD_02142 0.81 +0.4 2,206,349 - +0.2 2,207,180 - -0.6 2,207,187 - -0.1 2,207,224 - -1.8 2,207,319 + +0.2 2,207,423 - +0.2 2,207,425 - -0.7 2,207,425 - -0.5 2,207,597 + -0.2 2,207,598 - +0.9 2,207,598 - -0.3 2,207,598 - +0.3 2,207,598 - +0.2 2,207,598 - +0.4 2,207,645 + +0.7 2,207,646 - -0.3 2,207,650 - +0.7 2,207,774 + ECD_02145 0.14 +1.8 2,207,893 - ECD_02145 0.18 +0.2 2,207,983 - ECD_02145 0.21 -0.1 2,207,994 - ECD_02145 0.21 +0.1 2,208,031 + ECD_02145 0.23 +0.3 2,208,031 + ECD_02145 0.23 +0.7 2,208,032 - ECD_02145 0.23 +0.3
Or see this region's nucleotide sequence