Experiment: Control_TnA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01442 and ECD_01443 overlap by 4 nucleotides ECD_01443 and ECD_01444 overlap by 4 nucleotides ECD_01444 and ECD_01445 are separated by 1 nucleotides
ECD_01442: ECD_01442 - D,D-dipeptide ABC transporter ATPase, at 1,513,499 to 1,514,485
_01442
ECD_01443: ECD_01443 - D,D-dipeptide ABC transporter permease, at 1,514,482 to 1,515,378
_01443
ECD_01444: ECD_01444 - D,D-dipeptide ABC transporter permease, at 1,515,375 to 1,516,397
_01444
ECD_01445: ECD_01445 - D,D-dipeptide ABC transporter periplasmic binding protein, at 1,516,399 to 1,517,949
_01445
Position (kb) 1515
1516
1517 Strain fitness (log2 ratio) -1
0
1
2 at 1514.868 kb on - strand, within ECD_01443 at 1514.886 kb on + strand, within ECD_01443 at 1514.974 kb on - strand, within ECD_01443 at 1515.254 kb on - strand, within ECD_01443 at 1515.419 kb on - strand at 1516.038 kb on + strand, within ECD_01444 at 1516.207 kb on + strand, within ECD_01444 at 1516.405 kb on - strand at 1516.511 kb on + strand at 1516.687 kb on - strand, within ECD_01445 at 1516.733 kb on + strand, within ECD_01445 at 1516.837 kb on - strand, within ECD_01445
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnA remove 1,514,868 - ECD_01443 0.43 +2.2 1,514,886 + ECD_01443 0.45 -1.3 1,514,974 - ECD_01443 0.55 -0.6 1,515,254 - ECD_01443 0.86 +1.7 1,515,419 - -0.4 1,516,038 + ECD_01444 0.65 -0.5 1,516,207 + ECD_01444 0.81 +0.1 1,516,405 - +1.6 1,516,511 + +1.4 1,516,687 - ECD_01445 0.19 -0.2 1,516,733 + ECD_01445 0.22 -0.2 1,516,837 - ECD_01445 0.28 +0.3
Or see this region's nucleotide sequence