Experiment: Control_TnA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01312 and ECD_01313 are separated by 10 nucleotides ECD_01313 and ECD_01314 are separated by 36 nucleotides
ECD_01312: ECD_01312 - O-6-alkylguanine-DNA:cysteine-protein methyltransferase, at 1,384,889 to 1,385,404
_01312
ECD_01313: ECD_01313 - p-aminobenzoyl-glutamate transporter; membrane protein, at 1,385,415 to 1,386,941
_01313
ECD_01314: ECD_01314 - p-aminobenzoyl-glutamate hydrolase, B subunit, at 1,386,978 to 1,388,423
_01314
Position (kb)
1385
1386
1387 Strain fitness (log2 ratio)
-1
0
1 at 1384.460 kb on - strand at 1384.460 kb on - strand at 1385.090 kb on + strand, within ECD_01312 at 1385.177 kb on - strand, within ECD_01312 at 1385.200 kb on - strand, within ECD_01312 at 1386.299 kb on - strand, within ECD_01313 at 1386.312 kb on + strand, within ECD_01313 at 1386.397 kb on - strand, within ECD_01313 at 1386.557 kb on + strand, within ECD_01313 at 1386.559 kb on + strand, within ECD_01313 at 1386.616 kb on - strand, within ECD_01313 at 1386.720 kb on + strand, within ECD_01313 at 1386.895 kb on + strand at 1387.074 kb on + strand at 1387.151 kb on + strand, within ECD_01314 at 1387.151 kb on + strand, within ECD_01314 at 1387.184 kb on + strand, within ECD_01314 at 1387.184 kb on + strand, within ECD_01314 at 1387.189 kb on - strand, within ECD_01314 at 1387.742 kb on + strand, within ECD_01314 at 1387.742 kb on + strand, within ECD_01314
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnA remove 1,384,460 - +0.0 1,384,460 - +0.4 1,385,090 + ECD_01312 0.39 -1.0 1,385,177 - ECD_01312 0.56 -0.3 1,385,200 - ECD_01312 0.60 -0.3 1,386,299 - ECD_01313 0.58 -1.2 1,386,312 + ECD_01313 0.59 +0.3 1,386,397 - ECD_01313 0.64 -1.7 1,386,557 + ECD_01313 0.75 +0.5 1,386,559 + ECD_01313 0.75 +0.3 1,386,616 - ECD_01313 0.79 -0.7 1,386,720 + ECD_01313 0.85 +0.1 1,386,895 + -1.6 1,387,074 + -1.5 1,387,151 + ECD_01314 0.12 -0.7 1,387,151 + ECD_01314 0.12 +0.1 1,387,184 + ECD_01314 0.14 -0.7 1,387,184 + ECD_01314 0.14 +0.4 1,387,189 - ECD_01314 0.15 +1.5 1,387,742 + ECD_01314 0.53 -0.1 1,387,742 + ECD_01314 0.53 +0.7
Or see this region's nucleotide sequence