Strain Fitness in Escherichia coli BL21 around ECD_01236

Experiment: Control_TnA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01235 and ECD_01236 are separated by 11 nucleotidesECD_01236 and ECD_01237 are separated by 3 nucleotides ECD_01235: ECD_01235 - tryptophan synthase, beta subunit, at 1,302,814 to 1,304,007 _01235 ECD_01236: ECD_01236 - indole-3-glycerolphosphate synthetase and N-(5-phosphoribosyl)anthranilate isomerase, at 1,304,019 to 1,305,377 _01236 ECD_01237: ECD_01237 - fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase, at 1,305,381 to 1,306,976 _01237 Position (kb) 1304 1305 1306Strain fitness (log2 ratio) -2 -1 0 1 2at 1303.449 kb on + strand, within ECD_01235at 1303.451 kb on + strand, within ECD_01235at 1303.452 kb on - strand, within ECD_01235at 1303.611 kb on - strand, within ECD_01235at 1303.611 kb on - strand, within ECD_01235at 1303.788 kb on - strand, within ECD_01235at 1303.813 kb on - strand, within ECD_01235at 1303.854 kb on - strand, within ECD_01235at 1303.961 kb on + strandat 1303.962 kb on - strandat 1303.962 kb on - strandat 1303.962 kb on - strandat 1303.962 kb on - strandat 1304.145 kb on - strandat 1304.256 kb on - strand, within ECD_01236at 1304.357 kb on - strand, within ECD_01236at 1304.357 kb on - strand, within ECD_01236at 1304.357 kb on - strand, within ECD_01236at 1304.409 kb on - strand, within ECD_01236at 1304.546 kb on - strand, within ECD_01236at 1304.564 kb on - strand, within ECD_01236at 1304.724 kb on - strand, within ECD_01236at 1304.724 kb on - strand, within ECD_01236at 1304.973 kb on + strand, within ECD_01236at 1304.973 kb on + strand, within ECD_01236at 1304.974 kb on - strand, within ECD_01236at 1304.993 kb on - strand, within ECD_01236at 1305.039 kb on - strand, within ECD_01236at 1305.383 kb on - strandat 1305.436 kb on - strandat 1305.493 kb on - strandat 1305.650 kb on - strand, within ECD_01237at 1305.943 kb on - strand, within ECD_01237at 1305.943 kb on - strand, within ECD_01237at 1306.112 kb on + strand, within ECD_01237at 1306.165 kb on + strand, within ECD_01237

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnA
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1,303,449 + ECD_01235 0.53 +1.6
1,303,451 + ECD_01235 0.53 +0.9
1,303,452 - ECD_01235 0.53 -0.5
1,303,611 - ECD_01235 0.67 +0.2
1,303,611 - ECD_01235 0.67 +0.1
1,303,788 - ECD_01235 0.82 +1.8
1,303,813 - ECD_01235 0.84 -1.3
1,303,854 - ECD_01235 0.87 +0.9
1,303,961 + +0.6
1,303,962 - -0.6
1,303,962 - -0.0
1,303,962 - +0.3
1,303,962 - +1.8
1,304,145 - +0.7
1,304,256 - ECD_01236 0.17 +0.6
1,304,357 - ECD_01236 0.25 -1.0
1,304,357 - ECD_01236 0.25 +0.8
1,304,357 - ECD_01236 0.25 -0.0
1,304,409 - ECD_01236 0.29 -0.7
1,304,546 - ECD_01236 0.39 +0.9
1,304,564 - ECD_01236 0.40 +0.2
1,304,724 - ECD_01236 0.52 +0.1
1,304,724 - ECD_01236 0.52 +2.0
1,304,973 + ECD_01236 0.70 +0.9
1,304,973 + ECD_01236 0.70 +0.3
1,304,974 - ECD_01236 0.70 +0.7
1,304,993 - ECD_01236 0.72 +0.6
1,305,039 - ECD_01236 0.75 +0.3
1,305,383 - +0.8
1,305,436 - -1.3
1,305,493 - -0.6
1,305,650 - ECD_01237 0.17 -0.2
1,305,943 - ECD_01237 0.35 -0.2
1,305,943 - ECD_01237 0.35 -2.3
1,306,112 + ECD_01237 0.46 -0.4
1,306,165 + ECD_01237 0.49 +0.6

Or see this region's nucleotide sequence