Strain Fitness in Escherichia coli BL21 around ECD_00988

Experiment: Control_TnA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00987 and ECD_00988 overlap by 1 nucleotidesECD_00988 and ECD_00989 overlap by 4 nucleotidesECD_00989 and ECD_00990 are separated by 106 nucleotides ECD_00987: ECD_00987 - putative O-antigen capsule production periplasmic protein, at 1,050,938 to 1,053,034 _00987 ECD_00988: ECD_00988 - putative O-antigen capsule production periplasmic protein, at 1,053,034 to 1,053,780 _00988 ECD_00989: ECD_00989 - O-antigen capsule production lipoprotein, at 1,053,777 to 1,054,421 _00989 ECD_00990: ECD_00990 - O-antigen capsule production threonine-rich inner membrane protein, at 1,054,528 to 1,054,833 _00990 Position (kb) 1053 1054Strain fitness (log2 ratio) -1 0 1 2at 1052.038 kb on + strand, within ECD_00987at 1052.039 kb on - strand, within ECD_00987at 1052.039 kb on - strand, within ECD_00987at 1052.039 kb on - strand, within ECD_00987at 1052.040 kb on + strand, within ECD_00987at 1052.040 kb on + strand, within ECD_00987at 1052.041 kb on - strand, within ECD_00987at 1052.041 kb on - strand, within ECD_00987at 1052.091 kb on + strand, within ECD_00987at 1052.092 kb on - strand, within ECD_00987at 1052.253 kb on + strand, within ECD_00987at 1052.404 kb on - strand, within ECD_00987at 1052.494 kb on - strand, within ECD_00987at 1052.721 kb on + strand, within ECD_00987at 1052.722 kb on - strand, within ECD_00987at 1052.755 kb on + strand, within ECD_00987at 1052.757 kb on + strand, within ECD_00987at 1053.012 kb on - strandat 1053.208 kb on - strand, within ECD_00988at 1053.331 kb on - strand, within ECD_00988at 1053.331 kb on - strand, within ECD_00988at 1053.333 kb on + strand, within ECD_00988at 1053.355 kb on - strand, within ECD_00988at 1053.357 kb on - strand, within ECD_00988at 1053.407 kb on - strand, within ECD_00988at 1054.217 kb on + strand, within ECD_00989at 1054.687 kb on - strand, within ECD_00990at 1054.687 kb on - strand, within ECD_00990

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnA
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1,052,038 + ECD_00987 0.52 +1.0
1,052,039 - ECD_00987 0.53 -0.8
1,052,039 - ECD_00987 0.53 -0.0
1,052,039 - ECD_00987 0.53 +0.0
1,052,040 + ECD_00987 0.53 +0.4
1,052,040 + ECD_00987 0.53 -1.5
1,052,041 - ECD_00987 0.53 -0.1
1,052,041 - ECD_00987 0.53 -0.5
1,052,091 + ECD_00987 0.55 -0.8
1,052,092 - ECD_00987 0.55 -0.4
1,052,253 + ECD_00987 0.63 +1.5
1,052,404 - ECD_00987 0.70 +0.1
1,052,494 - ECD_00987 0.74 +0.4
1,052,721 + ECD_00987 0.85 +0.6
1,052,722 - ECD_00987 0.85 -0.6
1,052,755 + ECD_00987 0.87 +1.0
1,052,757 + ECD_00987 0.87 +0.7
1,053,012 - +0.5
1,053,208 - ECD_00988 0.23 -1.6
1,053,331 - ECD_00988 0.40 +0.9
1,053,331 - ECD_00988 0.40 +0.3
1,053,333 + ECD_00988 0.40 +0.3
1,053,355 - ECD_00988 0.43 +0.7
1,053,357 - ECD_00988 0.43 +0.7
1,053,407 - ECD_00988 0.50 -0.0
1,054,217 + ECD_00989 0.68 -0.8
1,054,687 - ECD_00990 0.52 +2.7
1,054,687 - ECD_00990 0.52 +1.3

Or see this region's nucleotide sequence