Experiment: Control_TnA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00987 and ECD_00988 overlap by 1 nucleotides ECD_00988 and ECD_00989 overlap by 4 nucleotides ECD_00989 and ECD_00990 are separated by 106 nucleotides
ECD_00987: ECD_00987 - putative O-antigen capsule production periplasmic protein, at 1,050,938 to 1,053,034
_00987
ECD_00988: ECD_00988 - putative O-antigen capsule production periplasmic protein, at 1,053,034 to 1,053,780
_00988
ECD_00989: ECD_00989 - O-antigen capsule production lipoprotein, at 1,053,777 to 1,054,421
_00989
ECD_00990: ECD_00990 - O-antigen capsule production threonine-rich inner membrane protein, at 1,054,528 to 1,054,833
_00990
Position (kb)
1053
1054 Strain fitness (log2 ratio)
-1
0
1
2 at 1052.038 kb on + strand, within ECD_00987 at 1052.039 kb on - strand, within ECD_00987 at 1052.039 kb on - strand, within ECD_00987 at 1052.039 kb on - strand, within ECD_00987 at 1052.040 kb on + strand, within ECD_00987 at 1052.040 kb on + strand, within ECD_00987 at 1052.041 kb on - strand, within ECD_00987 at 1052.041 kb on - strand, within ECD_00987 at 1052.091 kb on + strand, within ECD_00987 at 1052.092 kb on - strand, within ECD_00987 at 1052.253 kb on + strand, within ECD_00987 at 1052.404 kb on - strand, within ECD_00987 at 1052.494 kb on - strand, within ECD_00987 at 1052.721 kb on + strand, within ECD_00987 at 1052.722 kb on - strand, within ECD_00987 at 1052.755 kb on + strand, within ECD_00987 at 1052.757 kb on + strand, within ECD_00987 at 1053.012 kb on - strand at 1053.208 kb on - strand, within ECD_00988 at 1053.331 kb on - strand, within ECD_00988 at 1053.331 kb on - strand, within ECD_00988 at 1053.333 kb on + strand, within ECD_00988 at 1053.355 kb on - strand, within ECD_00988 at 1053.357 kb on - strand, within ECD_00988 at 1053.407 kb on - strand, within ECD_00988 at 1054.217 kb on + strand, within ECD_00989 at 1054.687 kb on - strand, within ECD_00990 at 1054.687 kb on - strand, within ECD_00990
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnA remove 1,052,038 + ECD_00987 0.52 +1.0 1,052,039 - ECD_00987 0.53 -0.8 1,052,039 - ECD_00987 0.53 -0.0 1,052,039 - ECD_00987 0.53 +0.0 1,052,040 + ECD_00987 0.53 +0.4 1,052,040 + ECD_00987 0.53 -1.5 1,052,041 - ECD_00987 0.53 -0.1 1,052,041 - ECD_00987 0.53 -0.5 1,052,091 + ECD_00987 0.55 -0.8 1,052,092 - ECD_00987 0.55 -0.4 1,052,253 + ECD_00987 0.63 +1.5 1,052,404 - ECD_00987 0.70 +0.1 1,052,494 - ECD_00987 0.74 +0.4 1,052,721 + ECD_00987 0.85 +0.6 1,052,722 - ECD_00987 0.85 -0.6 1,052,755 + ECD_00987 0.87 +1.0 1,052,757 + ECD_00987 0.87 +0.7 1,053,012 - +0.5 1,053,208 - ECD_00988 0.23 -1.6 1,053,331 - ECD_00988 0.40 +0.9 1,053,331 - ECD_00988 0.40 +0.3 1,053,333 + ECD_00988 0.40 +0.3 1,053,355 - ECD_00988 0.43 +0.7 1,053,357 - ECD_00988 0.43 +0.7 1,053,407 - ECD_00988 0.50 -0.0 1,054,217 + ECD_00989 0.68 -0.8 1,054,687 - ECD_00990 0.52 +2.7 1,054,687 - ECD_00990 0.52 +1.3
Or see this region's nucleotide sequence