Experiment: Control_TnA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00770 and ECD_00771 are separated by 73 nucleotides ECD_00771 and ECD_00772 are separated by 41 nucleotides ECD_00772 and ECD_00773 are separated by 264 nucleotides ECD_00773 and ECD_00774 are separated by 275 nucleotides
ECD_00770: ECD_00770 - DksA-type zinc finger protein, at 822,182 to 822,448
_00770
ECD_00771: ECD_00771 - Fe(II)-dependent oxygenase superfamily protein, at 822,522 to 823,199
_00771
ECD_00772: ECD_00772 - catecholate siderophore receptor, at 823,241 to 825,523
_00772
ECD_00773: ECD_00773 - colanic acid mucoidy stimulation protein, at 825,788 to 826,048
_00773
ECD_00774: ECD_00774 - 23S rRNA m(6)A1618 methyltransferase, SAM-dependent, at 826,324 to 827,250
_00774
Position (kb) 823
824
825
826 Strain fitness (log2 ratio) -2
-1
0
1 at 822.468 kb on + strand at 822.469 kb on - strand at 822.469 kb on - strand at 822.469 kb on - strand at 822.475 kb on - strand at 822.486 kb on + strand at 822.486 kb on + strand at 822.564 kb on - strand at 822.618 kb on - strand, within ECD_00771 at 822.628 kb on - strand, within ECD_00771 at 822.684 kb on - strand, within ECD_00771 at 822.745 kb on + strand, within ECD_00771 at 822.746 kb on - strand, within ECD_00771 at 822.823 kb on + strand, within ECD_00771 at 822.824 kb on - strand, within ECD_00771 at 822.993 kb on + strand, within ECD_00771 at 823.045 kb on - strand, within ECD_00771 at 823.192 kb on + strand at 823.193 kb on - strand at 823.200 kb on - strand at 823.293 kb on + strand at 823.378 kb on + strand at 823.530 kb on - strand, within ECD_00772 at 823.622 kb on - strand, within ECD_00772 at 823.677 kb on + strand, within ECD_00772 at 823.702 kb on - strand, within ECD_00772 at 823.926 kb on + strand, within ECD_00772 at 823.930 kb on + strand, within ECD_00772 at 823.930 kb on + strand, within ECD_00772 at 823.930 kb on + strand, within ECD_00772 at 823.931 kb on - strand, within ECD_00772 at 823.931 kb on - strand, within ECD_00772 at 823.933 kb on + strand, within ECD_00772 at 823.934 kb on - strand, within ECD_00772 at 823.935 kb on + strand, within ECD_00772 at 824.113 kb on - strand, within ECD_00772 at 824.262 kb on + strand, within ECD_00772 at 824.302 kb on - strand, within ECD_00772 at 824.302 kb on - strand, within ECD_00772 at 824.407 kb on + strand, within ECD_00772 at 824.410 kb on + strand, within ECD_00772 at 824.425 kb on + strand, within ECD_00772 at 824.453 kb on - strand, within ECD_00772 at 824.650 kb on + strand, within ECD_00772 at 824.766 kb on + strand, within ECD_00772 at 824.770 kb on + strand, within ECD_00772 at 824.770 kb on + strand, within ECD_00772 at 824.770 kb on + strand, within ECD_00772 at 824.770 kb on + strand, within ECD_00772 at 824.776 kb on - strand, within ECD_00772 at 824.903 kb on - strand, within ECD_00772 at 825.010 kb on + strand, within ECD_00772 at 825.133 kb on + strand, within ECD_00772 at 825.136 kb on - strand, within ECD_00772 at 825.167 kb on - strand, within ECD_00772 at 825.168 kb on + strand, within ECD_00772 at 825.168 kb on + strand, within ECD_00772 at 825.168 kb on + strand, within ECD_00772 at 825.168 kb on + strand, within ECD_00772 at 825.168 kb on + strand, within ECD_00772 at 825.168 kb on + strand, within ECD_00772 at 825.169 kb on - strand, within ECD_00772 at 825.169 kb on - strand, within ECD_00772 at 825.194 kb on - strand, within ECD_00772 at 825.410 kb on - strand at 825.458 kb on - strand at 825.546 kb on - strand at 825.705 kb on - strand at 825.987 kb on + strand, within ECD_00773 at 826.029 kb on - strand at 826.067 kb on - strand at 826.220 kb on + strand at 826.269 kb on - strand at 826.323 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnA remove 822,468 + +0.8 822,469 - +0.6 822,469 - -0.2 822,469 - +0.2 822,475 - -0.3 822,486 + +0.6 822,486 + +0.9 822,564 - -1.5 822,618 - ECD_00771 0.14 -0.3 822,628 - ECD_00771 0.16 +0.6 822,684 - ECD_00771 0.24 -0.9 822,745 + ECD_00771 0.33 -0.8 822,746 - ECD_00771 0.33 -1.1 822,823 + ECD_00771 0.44 -0.2 822,824 - ECD_00771 0.45 +0.3 822,993 + ECD_00771 0.69 +0.7 823,045 - ECD_00771 0.77 -0.8 823,192 + +0.2 823,193 - +1.2 823,200 - -0.8 823,293 + -0.7 823,378 + +0.3 823,530 - ECD_00772 0.13 +0.2 823,622 - ECD_00772 0.17 +1.4 823,677 + ECD_00772 0.19 +0.1 823,702 - ECD_00772 0.20 -0.2 823,926 + ECD_00772 0.30 -1.5 823,930 + ECD_00772 0.30 -0.4 823,930 + ECD_00772 0.30 -2.5 823,930 + ECD_00772 0.30 +0.3 823,931 - ECD_00772 0.30 -0.3 823,931 - ECD_00772 0.30 -1.2 823,933 + ECD_00772 0.30 -0.4 823,934 - ECD_00772 0.30 +0.6 823,935 + ECD_00772 0.30 +1.1 824,113 - ECD_00772 0.38 -0.1 824,262 + ECD_00772 0.45 -0.5 824,302 - ECD_00772 0.46 -1.1 824,302 - ECD_00772 0.46 +0.0 824,407 + ECD_00772 0.51 +0.2 824,410 + ECD_00772 0.51 +0.2 824,425 + ECD_00772 0.52 -1.0 824,453 - ECD_00772 0.53 -0.9 824,650 + ECD_00772 0.62 +0.2 824,766 + ECD_00772 0.67 -0.7 824,770 + ECD_00772 0.67 -0.9 824,770 + ECD_00772 0.67 -0.1 824,770 + ECD_00772 0.67 +0.3 824,770 + ECD_00772 0.67 -0.1 824,776 - ECD_00772 0.67 +0.3 824,903 - ECD_00772 0.73 -0.4 825,010 + ECD_00772 0.77 +0.2 825,133 + ECD_00772 0.83 +0.6 825,136 - ECD_00772 0.83 +0.9 825,167 - ECD_00772 0.84 -0.2 825,168 + ECD_00772 0.84 -0.1 825,168 + ECD_00772 0.84 +0.5 825,168 + ECD_00772 0.84 +0.4 825,168 + ECD_00772 0.84 +0.9 825,168 + ECD_00772 0.84 +1.1 825,168 + ECD_00772 0.84 -1.5 825,169 - ECD_00772 0.84 -0.1 825,169 - ECD_00772 0.84 +0.1 825,194 - ECD_00772 0.86 +0.6 825,410 - -0.2 825,458 - +1.0 825,546 - +0.9 825,705 - -0.5 825,987 + ECD_00773 0.76 -0.9 826,029 - -2.0 826,067 - +0.8 826,220 + +0.2 826,269 - -1.6 826,323 + -1.9
Or see this region's nucleotide sequence