Strain Fitness in Escherichia coli BL21 around ECD_00301

Experiment: Control_TnA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00300 and ECD_00301 are separated by 190 nucleotidesECD_00301 and ECD_00302 are separated by 1 nucleotidesECD_00302 and ECD_00303 are separated by 17 nucleotides ECD_00300: ECD_00300 - mhp operon transcriptional activator, at 337,122 to 337,955 _00300 ECD_00301: ECD_00301 - 3-(3-hydroxyphenyl)propionate hydroxylase, at 338,146 to 339,810 _00301 ECD_00302: ECD_00302 - 2,3-dihydroxyphenylpropionate 1,2-dioxygenase, at 339,812 to 340,756 _00302 ECD_00303: ECD_00303 - 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase, at 340,774 to 341,640 _00303 Position (kb) 338 339 340Strain fitness (log2 ratio) -2 -1 0 1 2at 337.164 kb on - strandat 337.264 kb on + strand, within ECD_00300at 337.264 kb on + strand, within ECD_00300at 337.265 kb on - strand, within ECD_00300at 337.265 kb on - strand, within ECD_00300at 337.265 kb on - strand, within ECD_00300at 337.430 kb on - strand, within ECD_00300at 337.777 kb on + strand, within ECD_00300at 337.777 kb on + strand, within ECD_00300at 337.777 kb on + strand, within ECD_00300at 337.777 kb on + strand, within ECD_00300at 337.778 kb on - strand, within ECD_00300at 337.778 kb on - strand, within ECD_00300at 337.778 kb on - strand, within ECD_00300at 337.886 kb on + strandat 337.891 kb on - strandat 337.978 kb on - strandat 338.043 kb on + strandat 338.044 kb on - strandat 338.089 kb on + strandat 338.153 kb on + strandat 338.154 kb on - strandat 338.154 kb on - strandat 338.188 kb on - strandat 338.289 kb on + strandat 338.290 kb on - strandat 338.385 kb on + strand, within ECD_00301at 338.386 kb on - strand, within ECD_00301at 338.386 kb on - strand, within ECD_00301at 338.779 kb on - strand, within ECD_00301at 338.782 kb on + strand, within ECD_00301at 338.782 kb on + strand, within ECD_00301at 338.782 kb on + strand, within ECD_00301at 338.782 kb on + strand, within ECD_00301at 338.782 kb on + strand, within ECD_00301at 338.782 kb on + strand, within ECD_00301at 338.783 kb on - strand, within ECD_00301at 338.783 kb on - strand, within ECD_00301at 338.783 kb on - strand, within ECD_00301at 338.783 kb on - strand, within ECD_00301at 338.783 kb on - strand, within ECD_00301at 338.837 kb on + strand, within ECD_00301at 338.853 kb on + strand, within ECD_00301at 338.968 kb on + strand, within ECD_00301at 338.969 kb on - strand, within ECD_00301at 339.093 kb on + strand, within ECD_00301at 339.157 kb on + strand, within ECD_00301at 339.158 kb on - strand, within ECD_00301at 339.158 kb on - strand, within ECD_00301at 339.249 kb on + strand, within ECD_00301at 339.254 kb on + strand, within ECD_00301at 339.254 kb on + strand, within ECD_00301at 339.255 kb on - strand, within ECD_00301at 339.255 kb on - strand, within ECD_00301at 339.255 kb on - strand, within ECD_00301at 339.283 kb on + strand, within ECD_00301at 339.304 kb on + strand, within ECD_00301at 339.402 kb on + strand, within ECD_00301at 339.611 kb on + strand, within ECD_00301at 339.663 kb on + strandat 339.663 kb on + strandat 339.663 kb on + strandat 339.663 kb on + strandat 339.664 kb on - strandat 339.735 kb on + strandat 339.735 kb on + strandat 339.735 kb on + strandat 339.736 kb on - strandat 339.822 kb on - strandat 339.858 kb on - strandat 339.879 kb on + strandat 339.971 kb on + strand, within ECD_00302at 339.971 kb on + strand, within ECD_00302at 339.987 kb on - strand, within ECD_00302at 340.141 kb on + strand, within ECD_00302at 340.141 kb on + strand, within ECD_00302at 340.141 kb on + strand, within ECD_00302at 340.142 kb on - strand, within ECD_00302at 340.142 kb on - strand, within ECD_00302at 340.462 kb on + strand, within ECD_00302

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnA
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337,164 - -0.7
337,264 + ECD_00300 0.17 +0.6
337,264 + ECD_00300 0.17 -0.4
337,265 - ECD_00300 0.17 -0.0
337,265 - ECD_00300 0.17 +0.1
337,265 - ECD_00300 0.17 +0.1
337,430 - ECD_00300 0.37 +0.6
337,777 + ECD_00300 0.79 -0.2
337,777 + ECD_00300 0.79 +0.2
337,777 + ECD_00300 0.79 +0.6
337,777 + ECD_00300 0.79 -0.2
337,778 - ECD_00300 0.79 +0.4
337,778 - ECD_00300 0.79 +1.9
337,778 - ECD_00300 0.79 -0.6
337,886 + -0.5
337,891 - -1.8
337,978 - +0.0
338,043 + -0.3
338,044 - +0.4
338,089 + -1.3
338,153 + +0.2
338,154 - -0.2
338,154 - -0.4
338,188 - +1.6
338,289 + -0.5
338,290 - -0.3
338,385 + ECD_00301 0.14 +0.7
338,386 - ECD_00301 0.14 +0.4
338,386 - ECD_00301 0.14 +1.5
338,779 - ECD_00301 0.38 +1.5
338,782 + ECD_00301 0.38 -0.6
338,782 + ECD_00301 0.38 +1.5
338,782 + ECD_00301 0.38 -0.6
338,782 + ECD_00301 0.38 +1.2
338,782 + ECD_00301 0.38 +0.0
338,782 + ECD_00301 0.38 +0.4
338,783 - ECD_00301 0.38 +0.4
338,783 - ECD_00301 0.38 -0.7
338,783 - ECD_00301 0.38 -0.3
338,783 - ECD_00301 0.38 +0.4
338,783 - ECD_00301 0.38 +0.1
338,837 + ECD_00301 0.42 -0.0
338,853 + ECD_00301 0.42 +0.0
338,968 + ECD_00301 0.49 -0.3
338,969 - ECD_00301 0.49 +0.9
339,093 + ECD_00301 0.57 -0.2
339,157 + ECD_00301 0.61 -0.6
339,158 - ECD_00301 0.61 -0.1
339,158 - ECD_00301 0.61 +1.2
339,249 + ECD_00301 0.66 -0.4
339,254 + ECD_00301 0.67 -0.4
339,254 + ECD_00301 0.67 +0.3
339,255 - ECD_00301 0.67 +0.3
339,255 - ECD_00301 0.67 -0.4
339,255 - ECD_00301 0.67 +0.5
339,283 + ECD_00301 0.68 -0.2
339,304 + ECD_00301 0.70 +0.6
339,402 + ECD_00301 0.75 +0.1
339,611 + ECD_00301 0.88 -0.9
339,663 + -0.1
339,663 + -0.5
339,663 + +2.2
339,663 + -0.4
339,664 - -0.0
339,735 + +0.1
339,735 + -0.4
339,735 + -1.2
339,736 - +0.1
339,822 - +0.1
339,858 - +0.1
339,879 + -0.3
339,971 + ECD_00302 0.17 +0.0
339,971 + ECD_00302 0.17 -1.8
339,987 - ECD_00302 0.19 +0.2
340,141 + ECD_00302 0.35 -1.5
340,141 + ECD_00302 0.35 -0.6
340,141 + ECD_00302 0.35 -0.4
340,142 - ECD_00302 0.35 +0.3
340,142 - ECD_00302 0.35 -0.2
340,462 + ECD_00302 0.69 -0.7

Or see this region's nucleotide sequence