Experiment: Control_TnA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00234 and ECD_00235 are separated by 57 nucleotides ECD_00235 and ECD_00236 are separated by 125 nucleotides ECD_00236 and ECD_00237 overlap by 82 nucleotides ECD_00237 and ECD_00238 are separated by 10 nucleotides
ECD_00234: ECD_00234 - fermentation-respiration switch protein; PTS Enzyme IIA(Glc)-binding protein; pNP-butyrate esterase activity, at 261,021 to 262,265
_00234
ECD_00235: ECD_00235 - DNA-binding transcriptional regulator, at 262,323 to 262,724
_00235
ECD_00236: ECD_00236 - IS1 protein InsA, at 262,850 to 263,125
_00236
ECD_00237: ECD_00237 - IS1 protein InsB, at 263,044 to 263,547
_00237
ECD_00238: ECD_00238 - outer membrane phosphoporin protein E, at 263,558 to 264,595
_00238
Position (kb) 262
263 Strain fitness (log2 ratio) -1
0
1
2 at 261.407 kb on + strand, within ECD_00234 at 261.414 kb on + strand, within ECD_00234 at 261.613 kb on + strand, within ECD_00234 at 261.649 kb on - strand, within ECD_00234 at 261.651 kb on + strand, within ECD_00234 at 261.651 kb on + strand, within ECD_00234 at 261.669 kb on + strand, within ECD_00234 at 261.702 kb on - strand, within ECD_00234 at 261.707 kb on + strand, within ECD_00234 at 261.779 kb on - strand, within ECD_00234 at 261.796 kb on + strand, within ECD_00234 at 261.848 kb on + strand, within ECD_00234 at 261.970 kb on - strand, within ECD_00234 at 261.970 kb on - strand, within ECD_00234 at 262.181 kb on - strand at 262.378 kb on + strand, within ECD_00235 at 262.387 kb on - strand, within ECD_00235 at 262.388 kb on + strand, within ECD_00235 at 262.400 kb on + strand, within ECD_00235 at 262.401 kb on - strand, within ECD_00235 at 262.524 kb on - strand, within ECD_00235 at 262.527 kb on + strand, within ECD_00235 at 262.527 kb on + strand, within ECD_00235 at 262.533 kb on + strand, within ECD_00235 at 262.533 kb on + strand, within ECD_00235 at 262.534 kb on - strand, within ECD_00235 at 262.765 kb on - strand at 262.825 kb on - strand at 263.644 kb on + strand at 263.682 kb on + strand, within ECD_00238
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnA remove 261,407 + ECD_00234 0.31 -0.4 261,414 + ECD_00234 0.32 +0.9 261,613 + ECD_00234 0.48 +0.2 261,649 - ECD_00234 0.50 -0.2 261,651 + ECD_00234 0.51 +0.1 261,651 + ECD_00234 0.51 +0.2 261,669 + ECD_00234 0.52 +0.5 261,702 - ECD_00234 0.55 -1.4 261,707 + ECD_00234 0.55 -0.1 261,779 - ECD_00234 0.61 -0.3 261,796 + ECD_00234 0.62 -0.4 261,848 + ECD_00234 0.66 +0.1 261,970 - ECD_00234 0.76 +0.9 261,970 - ECD_00234 0.76 +0.4 262,181 - +0.7 262,378 + ECD_00235 0.14 +0.2 262,387 - ECD_00235 0.16 +1.3 262,388 + ECD_00235 0.16 +0.7 262,400 + ECD_00235 0.19 -0.2 262,401 - ECD_00235 0.19 +0.7 262,524 - ECD_00235 0.50 +0.9 262,527 + ECD_00235 0.51 -0.0 262,527 + ECD_00235 0.51 -0.1 262,533 + ECD_00235 0.52 -0.5 262,533 + ECD_00235 0.52 +2.2 262,534 - ECD_00235 0.52 +0.6 262,765 - +0.7 262,825 - -0.9 263,644 + +0.1 263,682 + ECD_00238 0.12 +0.9
Or see this region's nucleotide sequence