Experiment: Control_TnA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00152 and ECD_00153 are separated by 157 nucleotides ECD_00153 and ECD_00154 are separated by 224 nucleotides
ECD_00152: ECD_00152 - iron(3+)-hydroxamate import ABC transporter permease, at 174,305 to 176,287
_00152
ECD_00153: ECD_00153 - glutamate-1-semialdehyde aminotransferase (aminomutase), at 176,445 to 177,725
_00153
ECD_00154: ECD_00154 - H(+)/Cl(-) exchange transporter, at 177,950 to 179,371
_00154
Position (kb) 176
177
178 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 175.531 kb on + strand, within ECD_00152 at 175.532 kb on - strand, within ECD_00152 at 175.534 kb on + strand, within ECD_00152 at 175.534 kb on + strand, within ECD_00152 at 175.699 kb on + strand, within ECD_00152 at 175.699 kb on + strand, within ECD_00152 at 176.092 kb on + strand at 176.136 kb on + strand at 176.136 kb on + strand at 176.136 kb on + strand at 176.261 kb on + strand at 176.296 kb on + strand at 176.297 kb on - strand at 176.298 kb on + strand at 176.400 kb on - strand at 177.768 kb on + strand at 177.768 kb on + strand at 177.768 kb on + strand at 177.769 kb on - strand at 177.769 kb on - strand at 177.769 kb on - strand at 177.769 kb on - strand at 177.769 kb on - strand at 177.769 kb on - strand at 177.769 kb on - strand at 177.779 kb on + strand at 177.846 kb on - strand at 177.870 kb on + strand at 177.927 kb on + strand at 177.972 kb on + strand at 178.061 kb on - strand at 178.141 kb on + strand, within ECD_00154 at 178.156 kb on - strand, within ECD_00154 at 178.156 kb on - strand, within ECD_00154 at 178.159 kb on + strand, within ECD_00154 at 178.160 kb on - strand, within ECD_00154 at 178.169 kb on - strand, within ECD_00154 at 178.429 kb on + strand, within ECD_00154 at 178.429 kb on + strand, within ECD_00154 at 178.475 kb on - strand, within ECD_00154 at 178.578 kb on - strand, within ECD_00154 at 178.595 kb on - strand, within ECD_00154 at 178.607 kb on - strand, within ECD_00154 at 178.618 kb on + strand, within ECD_00154 at 178.618 kb on + strand, within ECD_00154 at 178.630 kb on + strand, within ECD_00154 at 178.630 kb on + strand, within ECD_00154 at 178.631 kb on - strand, within ECD_00154 at 178.631 kb on - strand, within ECD_00154 at 178.631 kb on - strand, within ECD_00154 at 178.631 kb on - strand, within ECD_00154 at 178.697 kb on - strand, within ECD_00154 at 178.713 kb on - strand, within ECD_00154
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnA remove 175,531 + ECD_00152 0.62 -0.4 175,532 - ECD_00152 0.62 -0.9 175,534 + ECD_00152 0.62 +0.1 175,534 + ECD_00152 0.62 +1.4 175,699 + ECD_00152 0.70 +0.1 175,699 + ECD_00152 0.70 +1.0 176,092 + -0.5 176,136 + +0.0 176,136 + -0.6 176,136 + +0.1 176,261 + +0.3 176,296 + +0.3 176,297 - -0.7 176,298 + -0.4 176,400 - -0.4 177,768 + -1.0 177,768 + -2.9 177,768 + -0.6 177,769 - +0.2 177,769 - +0.1 177,769 - -1.4 177,769 - +0.5 177,769 - +0.3 177,769 - -0.3 177,769 - -0.2 177,779 + +0.1 177,846 - -0.1 177,870 + +0.5 177,927 + +0.6 177,972 + -0.9 178,061 - -0.7 178,141 + ECD_00154 0.13 +0.5 178,156 - ECD_00154 0.14 -1.1 178,156 - ECD_00154 0.14 +0.3 178,159 + ECD_00154 0.15 -0.9 178,160 - ECD_00154 0.15 -0.5 178,169 - ECD_00154 0.15 -0.7 178,429 + ECD_00154 0.34 +0.6 178,429 + ECD_00154 0.34 -0.1 178,475 - ECD_00154 0.37 +1.5 178,578 - ECD_00154 0.44 -0.0 178,595 - ECD_00154 0.45 +0.9 178,607 - ECD_00154 0.46 -0.6 178,618 + ECD_00154 0.47 -0.2 178,618 + ECD_00154 0.47 +0.2 178,630 + ECD_00154 0.48 -0.4 178,630 + ECD_00154 0.48 -0.3 178,631 - ECD_00154 0.48 -0.3 178,631 - ECD_00154 0.48 +0.7 178,631 - ECD_00154 0.48 +0.7 178,631 - ECD_00154 0.48 +0.9 178,697 - ECD_00154 0.53 -0.2 178,713 - ECD_00154 0.54 -0.0
Or see this region's nucleotide sequence