Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25960

Experiment: HBM-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS25955 and LU632_RS25960 overlap by 4 nucleotidesLU632_RS25960 and LU632_RS25965 overlap by 4 nucleotidesLU632_RS25965 and LU632_RS25970 overlap by 14 nucleotides LU632_RS25955: LU632_RS25955 - baseplate J/gp47 family protein, at 3,217 to 4,398 _RS25955 LU632_RS25960: LU632_RS25960 - hypothetical protein, at 4,395 to 4,748 _RS25960 LU632_RS25965: LU632_RS25965 - translation initiation factor IF-2, at 4,745 to 5,497 _RS25965 LU632_RS25970: LU632_RS25970 - hypothetical protein, at 5,484 to 6,419 _RS25970 Position (kb) 4 5Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3.398 kb on + strand, within LU632_RS25955at 3.398 kb on + strand, within LU632_RS25955at 3.399 kb on - strand, within LU632_RS25955at 3.399 kb on - strand, within LU632_RS25955at 3.399 kb on - strand, within LU632_RS25955at 3.399 kb on - strand, within LU632_RS25955at 3.399 kb on - strand, within LU632_RS25955at 3.399 kb on - strand, within LU632_RS25955at 3.400 kb on + strand, within LU632_RS25955at 3.400 kb on + strand, within LU632_RS25955at 3.400 kb on + strand, within LU632_RS25955at 3.401 kb on - strand, within LU632_RS25955at 3.401 kb on - strand, within LU632_RS25955at 3.401 kb on - strand, within LU632_RS25955at 3.401 kb on - strand, within LU632_RS25955at 3.431 kb on + strand, within LU632_RS25955at 3.431 kb on + strand, within LU632_RS25955at 3.431 kb on + strand, within LU632_RS25955at 3.431 kb on + strand, within LU632_RS25955at 3.431 kb on + strand, within LU632_RS25955at 3.431 kb on + strand, within LU632_RS25955at 3.431 kb on + strand, within LU632_RS25955at 3.431 kb on + strand, within LU632_RS25955at 3.431 kb on + strand, within LU632_RS25955at 3.431 kb on + strand, within LU632_RS25955at 3.431 kb on + strand, within LU632_RS25955at 3.432 kb on - strand, within LU632_RS25955at 3.432 kb on - strand, within LU632_RS25955at 3.432 kb on - strand, within LU632_RS25955at 3.432 kb on - strand, within LU632_RS25955at 3.477 kb on - strand, within LU632_RS25955at 3.553 kb on + strand, within LU632_RS25955at 3.553 kb on + strand, within LU632_RS25955at 3.553 kb on + strand, within LU632_RS25955at 3.553 kb on + strand, within LU632_RS25955at 3.560 kb on + strand, within LU632_RS25955at 3.560 kb on + strand, within LU632_RS25955at 3.564 kb on + strand, within LU632_RS25955at 3.564 kb on + strand, within LU632_RS25955at 3.564 kb on + strand, within LU632_RS25955at 3.564 kb on + strand, within LU632_RS25955at 3.564 kb on + strand, within LU632_RS25955at 3.564 kb on + strand, within LU632_RS25955at 3.565 kb on - strand, within LU632_RS25955at 3.565 kb on - strand, within LU632_RS25955at 3.593 kb on + strand, within LU632_RS25955at 3.594 kb on - strand, within LU632_RS25955at 3.675 kb on + strand, within LU632_RS25955at 3.676 kb on - strand, within LU632_RS25955at 3.676 kb on - strand, within LU632_RS25955at 3.676 kb on - strand, within LU632_RS25955at 3.676 kb on - strand, within LU632_RS25955at 3.682 kb on - strand, within LU632_RS25955at 3.784 kb on + strand, within LU632_RS25955at 3.785 kb on - strand, within LU632_RS25955at 3.914 kb on - strand, within LU632_RS25955at 3.914 kb on - strand, within LU632_RS25955at 4.003 kb on + strand, within LU632_RS25955at 4.030 kb on - strand, within LU632_RS25955at 4.135 kb on + strand, within LU632_RS25955at 4.142 kb on - strand, within LU632_RS25955at 4.193 kb on + strand, within LU632_RS25955at 4.193 kb on + strand, within LU632_RS25955at 4.194 kb on - strand, within LU632_RS25955at 4.240 kb on + strand, within LU632_RS25955at 4.280 kb on + strandat 4.280 kb on + strandat 4.280 kb on + strandat 4.281 kb on - strandat 4.281 kb on - strandat 4.284 kb on + strandat 4.284 kb on + strandat 4.284 kb on + strandat 4.285 kb on - strandat 4.285 kb on - strandat 4.296 kb on - strandat 4.334 kb on + strandat 4.335 kb on - strandat 4.340 kb on + strandat 4.340 kb on + strandat 4.340 kb on + strandat 4.340 kb on + strandat 4.340 kb on + strandat 4.340 kb on + strandat 4.341 kb on - strandat 4.398 kb on + strandat 4.399 kb on - strandat 4.426 kb on + strandat 4.426 kb on + strandat 4.427 kb on - strandat 4.440 kb on + strand, within LU632_RS25960at 4.490 kb on - strand, within LU632_RS25960at 4.497 kb on + strand, within LU632_RS25960at 4.497 kb on + strand, within LU632_RS25960at 4.497 kb on + strand, within LU632_RS25960at 4.498 kb on - strand, within LU632_RS25960at 4.549 kb on + strand, within LU632_RS25960at 4.549 kb on + strand, within LU632_RS25960at 4.549 kb on + strand, within LU632_RS25960at 4.550 kb on - strand, within LU632_RS25960at 4.550 kb on - strand, within LU632_RS25960at 4.550 kb on - strand, within LU632_RS25960at 4.564 kb on + strand, within LU632_RS25960at 4.565 kb on - strand, within LU632_RS25960at 4.565 kb on - strand, within LU632_RS25960at 4.565 kb on - strand, within LU632_RS25960at 4.565 kb on - strand, within LU632_RS25960at 4.568 kb on + strand, within LU632_RS25960at 4.568 kb on + strand, within LU632_RS25960at 4.569 kb on - strand, within LU632_RS25960at 4.629 kb on - strand, within LU632_RS25960at 4.629 kb on - strand, within LU632_RS25960at 4.685 kb on - strand, within LU632_RS25960at 4.714 kb on + strandat 4.714 kb on + strandat 4.714 kb on + strandat 4.715 kb on - strandat 4.731 kb on + strandat 4.845 kb on - strand, within LU632_RS25965at 4.909 kb on + strand, within LU632_RS25965at 4.910 kb on - strand, within LU632_RS25965at 4.995 kb on - strand, within LU632_RS25965at 4.995 kb on - strand, within LU632_RS25965at 5.055 kb on - strand, within LU632_RS25965at 5.055 kb on - strand, within LU632_RS25965at 5.143 kb on + strand, within LU632_RS25965at 5.143 kb on + strand, within LU632_RS25965at 5.143 kb on + strand, within LU632_RS25965at 5.143 kb on + strand, within LU632_RS25965at 5.143 kb on + strand, within LU632_RS25965at 5.143 kb on + strand, within LU632_RS25965at 5.143 kb on + strand, within LU632_RS25965at 5.143 kb on + strand, within LU632_RS25965at 5.143 kb on + strand, within LU632_RS25965at 5.143 kb on + strand, within LU632_RS25965at 5.144 kb on - strand, within LU632_RS25965at 5.144 kb on - strand, within LU632_RS25965at 5.144 kb on - strand, within LU632_RS25965at 5.144 kb on - strand, within LU632_RS25965at 5.144 kb on - strand, within LU632_RS25965at 5.144 kb on - strand, within LU632_RS25965at 5.144 kb on - strand, within LU632_RS25965at 5.144 kb on - strand, within LU632_RS25965at 5.144 kb on - strand, within LU632_RS25965at 5.144 kb on - strand, within LU632_RS25965at 5.144 kb on - strand, within LU632_RS25965at 5.144 kb on - strand, within LU632_RS25965at 5.144 kb on - strand, within LU632_RS25965at 5.165 kb on + strand, within LU632_RS25965at 5.165 kb on + strand, within LU632_RS25965at 5.165 kb on + strand, within LU632_RS25965at 5.166 kb on - strand, within LU632_RS25965at 5.166 kb on - strand, within LU632_RS25965at 5.166 kb on - strand, within LU632_RS25965at 5.166 kb on - strand, within LU632_RS25965at 5.166 kb on - strand, within LU632_RS25965at 5.194 kb on + strand, within LU632_RS25965at 5.194 kb on + strand, within LU632_RS25965at 5.194 kb on + strand, within LU632_RS25965at 5.194 kb on + strand, within LU632_RS25965at 5.195 kb on - strand, within LU632_RS25965at 5.195 kb on - strand, within LU632_RS25965at 5.285 kb on + strand, within LU632_RS25965at 5.285 kb on + strand, within LU632_RS25965at 5.285 kb on + strand, within LU632_RS25965at 5.285 kb on + strand, within LU632_RS25965at 5.285 kb on + strand, within LU632_RS25965at 5.285 kb on + strand, within LU632_RS25965at 5.285 kb on + strand, within LU632_RS25965at 5.285 kb on + strand, within LU632_RS25965at 5.285 kb on + strand, within LU632_RS25965at 5.285 kb on + strand, within LU632_RS25965at 5.286 kb on - strand, within LU632_RS25965at 5.286 kb on - strand, within LU632_RS25965at 5.286 kb on - strand, within LU632_RS25965at 5.456 kb on + strandat 5.456 kb on + strandat 5.457 kb on - strandat 5.457 kb on - strandat 5.457 kb on - strandat 5.457 kb on - strandat 5.457 kb on - strandat 5.478 kb on + strandat 5.479 kb on - strandat 5.479 kb on - strandat 5.548 kb on - strandat 5.548 kb on - strandat 5.591 kb on + strand, within LU632_RS25970at 5.592 kb on - strand, within LU632_RS25970at 5.592 kb on - strand, within LU632_RS25970at 5.592 kb on - strand, within LU632_RS25970at 5.615 kb on + strand, within LU632_RS25970at 5.616 kb on - strand, within LU632_RS25970at 5.668 kb on + strand, within LU632_RS25970at 5.668 kb on + strand, within LU632_RS25970at 5.669 kb on - strand, within LU632_RS25970at 5.669 kb on - strand, within LU632_RS25970

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-Glucose
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3,398 + LU632_RS25955 0.15 -0.0
3,398 + LU632_RS25955 0.15 -0.1
3,399 - LU632_RS25955 0.15 -0.2
3,399 - LU632_RS25955 0.15 +0.3
3,399 - LU632_RS25955 0.15 -0.5
3,399 - LU632_RS25955 0.15 +0.4
3,399 - LU632_RS25955 0.15 -1.1
3,399 - LU632_RS25955 0.15 +1.1
3,400 + LU632_RS25955 0.15 +0.2
3,400 + LU632_RS25955 0.15 -0.1
3,400 + LU632_RS25955 0.15 +0.4
3,401 - LU632_RS25955 0.16 +0.1
3,401 - LU632_RS25955 0.16 +0.3
3,401 - LU632_RS25955 0.16 +0.2
3,401 - LU632_RS25955 0.16 -1.7
3,431 + LU632_RS25955 0.18 +1.5
3,431 + LU632_RS25955 0.18 -0.0
3,431 + LU632_RS25955 0.18 +0.5
3,431 + LU632_RS25955 0.18 +0.7
3,431 + LU632_RS25955 0.18 +1.2
3,431 + LU632_RS25955 0.18 -0.2
3,431 + LU632_RS25955 0.18 +0.2
3,431 + LU632_RS25955 0.18 +0.2
3,431 + LU632_RS25955 0.18 -2.1
3,431 + LU632_RS25955 0.18 -0.0
3,431 + LU632_RS25955 0.18 -0.1
3,432 - LU632_RS25955 0.18 +0.1
3,432 - LU632_RS25955 0.18 -0.7
3,432 - LU632_RS25955 0.18 +0.5
3,432 - LU632_RS25955 0.18 +0.3
3,477 - LU632_RS25955 0.22 -0.3
3,553 + LU632_RS25955 0.28 +0.5
3,553 + LU632_RS25955 0.28 -0.2
3,553 + LU632_RS25955 0.28 +0.6
3,553 + LU632_RS25955 0.28 -1.3
3,560 + LU632_RS25955 0.29 -0.4
3,560 + LU632_RS25955 0.29 -0.1
3,564 + LU632_RS25955 0.29 +0.2
3,564 + LU632_RS25955 0.29 -0.4
3,564 + LU632_RS25955 0.29 -1.7
3,564 + LU632_RS25955 0.29 -0.4
3,564 + LU632_RS25955 0.29 +0.1
3,564 + LU632_RS25955 0.29 +0.5
3,565 - LU632_RS25955 0.29 +0.9
3,565 - LU632_RS25955 0.29 -2.1
3,593 + LU632_RS25955 0.32 +1.1
3,594 - LU632_RS25955 0.32 -0.1
3,675 + LU632_RS25955 0.39 +0.4
3,676 - LU632_RS25955 0.39 +0.0
3,676 - LU632_RS25955 0.39 -0.3
3,676 - LU632_RS25955 0.39 +0.2
3,676 - LU632_RS25955 0.39 +0.1
3,682 - LU632_RS25955 0.39 +0.2
3,784 + LU632_RS25955 0.48 +0.4
3,785 - LU632_RS25955 0.48 +0.5
3,914 - LU632_RS25955 0.59 +0.0
3,914 - LU632_RS25955 0.59 -0.7
4,003 + LU632_RS25955 0.66 +0.1
4,030 - LU632_RS25955 0.69 +0.6
4,135 + LU632_RS25955 0.78 +0.1
4,142 - LU632_RS25955 0.78 +0.3
4,193 + LU632_RS25955 0.83 +0.2
4,193 + LU632_RS25955 0.83 -1.1
4,194 - LU632_RS25955 0.83 +0.1
4,240 + LU632_RS25955 0.87 -0.1
4,280 + +1.2
4,280 + -0.1
4,280 + +0.3
4,281 - +1.5
4,281 - +0.6
4,284 + -0.4
4,284 + +0.4
4,284 + +0.4
4,285 - +0.7
4,285 - -0.1
4,296 - -0.1
4,334 + -0.1
4,335 - +0.7
4,340 + +0.4
4,340 + -0.3
4,340 + +0.3
4,340 + -0.1
4,340 + -0.1
4,340 + -0.3
4,341 - -0.7
4,398 + +0.0
4,399 - -0.2
4,426 + +0.4
4,426 + +0.0
4,427 - -0.7
4,440 + LU632_RS25960 0.13 +0.3
4,490 - LU632_RS25960 0.27 +1.2
4,497 + LU632_RS25960 0.29 -0.2
4,497 + LU632_RS25960 0.29 +1.2
4,497 + LU632_RS25960 0.29 -0.1
4,498 - LU632_RS25960 0.29 -1.1
4,549 + LU632_RS25960 0.44 -0.0
4,549 + LU632_RS25960 0.44 +0.5
4,549 + LU632_RS25960 0.44 +0.1
4,550 - LU632_RS25960 0.44 +0.2
4,550 - LU632_RS25960 0.44 +0.4
4,550 - LU632_RS25960 0.44 -0.2
4,564 + LU632_RS25960 0.48 -0.8
4,565 - LU632_RS25960 0.48 +0.5
4,565 - LU632_RS25960 0.48 -0.3
4,565 - LU632_RS25960 0.48 -0.7
4,565 - LU632_RS25960 0.48 -0.8
4,568 + LU632_RS25960 0.49 -0.2
4,568 + LU632_RS25960 0.49 +0.2
4,569 - LU632_RS25960 0.49 +0.9
4,629 - LU632_RS25960 0.66 +1.1
4,629 - LU632_RS25960 0.66 -0.2
4,685 - LU632_RS25960 0.82 -0.7
4,714 + -0.4
4,714 + +0.2
4,714 + -1.2
4,715 - -0.5
4,731 + +0.3
4,845 - LU632_RS25965 0.13 +1.7
4,909 + LU632_RS25965 0.22 +0.1
4,910 - LU632_RS25965 0.22 -0.7
4,995 - LU632_RS25965 0.33 +0.5
4,995 - LU632_RS25965 0.33 +0.3
5,055 - LU632_RS25965 0.41 +0.2
5,055 - LU632_RS25965 0.41 +1.5
5,143 + LU632_RS25965 0.53 +1.2
5,143 + LU632_RS25965 0.53 -2.4
5,143 + LU632_RS25965 0.53 -0.0
5,143 + LU632_RS25965 0.53 +0.5
5,143 + LU632_RS25965 0.53 +0.1
5,143 + LU632_RS25965 0.53 -1.1
5,143 + LU632_RS25965 0.53 +0.6
5,143 + LU632_RS25965 0.53 +0.2
5,143 + LU632_RS25965 0.53 +0.0
5,143 + LU632_RS25965 0.53 -0.4
5,144 - LU632_RS25965 0.53 -3.1
5,144 - LU632_RS25965 0.53 +0.1
5,144 - LU632_RS25965 0.53 +1.1
5,144 - LU632_RS25965 0.53 +0.1
5,144 - LU632_RS25965 0.53 -0.1
5,144 - LU632_RS25965 0.53 -2.7
5,144 - LU632_RS25965 0.53 -0.5
5,144 - LU632_RS25965 0.53 -0.0
5,144 - LU632_RS25965 0.53 +0.1
5,144 - LU632_RS25965 0.53 +0.3
5,144 - LU632_RS25965 0.53 +0.2
5,144 - LU632_RS25965 0.53 -0.4
5,144 - LU632_RS25965 0.53 -1.8
5,165 + LU632_RS25965 0.56 -1.3
5,165 + LU632_RS25965 0.56 -0.5
5,165 + LU632_RS25965 0.56 +0.8
5,166 - LU632_RS25965 0.56 +0.1
5,166 - LU632_RS25965 0.56 +0.0
5,166 - LU632_RS25965 0.56 -0.1
5,166 - LU632_RS25965 0.56 -1.6
5,166 - LU632_RS25965 0.56 -2.7
5,194 + LU632_RS25965 0.60 -0.2
5,194 + LU632_RS25965 0.60 -0.3
5,194 + LU632_RS25965 0.60 +0.2
5,194 + LU632_RS25965 0.60 +0.8
5,195 - LU632_RS25965 0.60 +0.1
5,195 - LU632_RS25965 0.60 +0.9
5,285 + LU632_RS25965 0.72 +0.1
5,285 + LU632_RS25965 0.72 -0.6
5,285 + LU632_RS25965 0.72 -0.3
5,285 + LU632_RS25965 0.72 +0.2
5,285 + LU632_RS25965 0.72 -0.1
5,285 + LU632_RS25965 0.72 +0.4
5,285 + LU632_RS25965 0.72 -0.5
5,285 + LU632_RS25965 0.72 +0.3
5,285 + LU632_RS25965 0.72 -1.7
5,285 + LU632_RS25965 0.72 -0.3
5,286 - LU632_RS25965 0.72 +0.8
5,286 - LU632_RS25965 0.72 +0.4
5,286 - LU632_RS25965 0.72 +0.3
5,456 + -0.5
5,456 + +0.5
5,457 - +0.1
5,457 - +0.9
5,457 - +0.8
5,457 - +0.3
5,457 - -0.0
5,478 + +0.3
5,479 - -0.1
5,479 - -1.4
5,548 - +0.6
5,548 - -0.7
5,591 + LU632_RS25970 0.11 +0.3
5,592 - LU632_RS25970 0.12 +1.7
5,592 - LU632_RS25970 0.12 +2.1
5,592 - LU632_RS25970 0.12 -0.2
5,615 + LU632_RS25970 0.14 +0.5
5,616 - LU632_RS25970 0.14 +1.0
5,668 + LU632_RS25970 0.20 +0.9
5,668 + LU632_RS25970 0.20 +2.1
5,669 - LU632_RS25970 0.20 -0.0
5,669 - LU632_RS25970 0.20 -0.5

Or see this region's nucleotide sequence