Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24360

Experiment: HBM-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS24350 and LU632_RS24355 are separated by 100 nucleotidesLU632_RS24355 and LU632_RS24360 overlap by 1 nucleotidesLU632_RS24360 and LU632_RS24365 are separated by 196 nucleotidesLU632_RS24365 and LU632_RS24370 are separated by 80 nucleotides LU632_RS24350: LU632_RS24350 - IS6 family transposase, at 4,645,318 to 4,646,022 _RS24350 LU632_RS24355: LU632_RS24355 - type II toxin-antitoxin system PemK/MazF family toxin, at 4,646,123 to 4,646,488 _RS24355 LU632_RS24360: LU632_RS24360 - hypothetical protein, at 4,646,488 to 4,646,760 _RS24360 LU632_RS24365: LU632_RS24365 - IS6 family transposase, at 4,646,957 to 4,647,514 _RS24365 LU632_RS24370: LU632_RS24370 - IS91 family transposase, at 4,647,595 to 4,648,818 _RS24370 Position (kb) 4646 4647Strain fitness (log2 ratio) -1 0 1 2at 4646.158 kb on + strandat 4646.173 kb on + strand, within LU632_RS24355at 4646.174 kb on - strand, within LU632_RS24355at 4646.174 kb on - strand, within LU632_RS24355at 4646.293 kb on - strand, within LU632_RS24355at 4646.397 kb on + strand, within LU632_RS24355at 4646.397 kb on + strand, within LU632_RS24355at 4646.398 kb on - strand, within LU632_RS24355at 4646.398 kb on - strand, within LU632_RS24355at 4646.398 kb on - strand, within LU632_RS24355at 4646.398 kb on - strand, within LU632_RS24355at 4646.400 kb on + strand, within LU632_RS24355at 4646.401 kb on - strand, within LU632_RS24355at 4646.493 kb on + strandat 4646.494 kb on - strandat 4646.798 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-Glucose
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4,646,158 + -0.4
4,646,173 + LU632_RS24355 0.14 +1.1
4,646,174 - LU632_RS24355 0.14 -0.4
4,646,174 - LU632_RS24355 0.14 +0.1
4,646,293 - LU632_RS24355 0.46 -1.5
4,646,397 + LU632_RS24355 0.75 +0.0
4,646,397 + LU632_RS24355 0.75 -0.1
4,646,398 - LU632_RS24355 0.75 +0.8
4,646,398 - LU632_RS24355 0.75 -0.0
4,646,398 - LU632_RS24355 0.75 +0.9
4,646,398 - LU632_RS24355 0.75 -0.2
4,646,400 + LU632_RS24355 0.76 +0.0
4,646,401 - LU632_RS24355 0.76 -0.0
4,646,493 + +0.4
4,646,494 - +0.4
4,646,798 - +2.2

Or see this region's nucleotide sequence