Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS22885 and LU632_RS22890 overlap by 11 nucleotides LU632_RS22890 and pilM overlap by 1 nucleotides pilM and mrcA are separated by 151 nucleotides
LU632_RS22885: LU632_RS22885 - hypothetical protein, at 4,356,919 to 4,357,422
_RS22885
LU632_RS22890: LU632_RS22890 - PilN domain-containing protein, at 4,357,412 to 4,357,996
_RS22890
LU632_RS22895: pilM - pilus assembly protein PilM, at 4,357,996 to 4,358,820
pilM
LU632_RS22900: mrcA - peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA, at 4,358,972 to 4,361,518
mrcA
Position (kb) 4357
4358
4359 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4356.997 kb on + strand, within LU632_RS22885 at 4357.021 kb on + strand, within LU632_RS22885 at 4357.021 kb on + strand, within LU632_RS22885 at 4357.021 kb on + strand, within LU632_RS22885 at 4357.021 kb on + strand, within LU632_RS22885 at 4357.022 kb on - strand, within LU632_RS22885 at 4357.022 kb on - strand, within LU632_RS22885 at 4357.022 kb on - strand, within LU632_RS22885 at 4357.022 kb on - strand, within LU632_RS22885 at 4357.086 kb on + strand, within LU632_RS22885 at 4357.126 kb on - strand, within LU632_RS22885 at 4357.126 kb on - strand, within LU632_RS22885 at 4357.188 kb on + strand, within LU632_RS22885 at 4357.188 kb on + strand, within LU632_RS22885 at 4357.207 kb on + strand, within LU632_RS22885 at 4357.251 kb on + strand, within LU632_RS22885 at 4357.252 kb on - strand, within LU632_RS22885 at 4357.252 kb on - strand, within LU632_RS22885 at 4357.252 kb on - strand, within LU632_RS22885 at 4357.321 kb on + strand, within LU632_RS22885 at 4357.322 kb on - strand, within LU632_RS22885 at 4357.391 kb on + strand at 4357.414 kb on - strand at 4357.550 kb on - strand, within LU632_RS22890 at 4357.626 kb on - strand, within LU632_RS22890 at 4357.838 kb on + strand, within LU632_RS22890 at 4357.839 kb on - strand, within LU632_RS22890 at 4357.839 kb on - strand, within LU632_RS22890 at 4357.839 kb on - strand, within LU632_RS22890 at 4357.958 kb on + strand at 4358.171 kb on + strand, within pilM at 4358.171 kb on + strand, within pilM at 4358.249 kb on + strand, within pilM at 4358.250 kb on - strand, within pilM at 4358.250 kb on - strand, within pilM at 4358.307 kb on + strand, within pilM at 4358.307 kb on + strand, within pilM at 4358.308 kb on - strand, within pilM at 4358.308 kb on - strand, within pilM at 4358.308 kb on - strand, within pilM at 4358.308 kb on - strand, within pilM at 4358.308 kb on - strand, within pilM at 4358.428 kb on + strand, within pilM at 4358.443 kb on + strand, within pilM at 4358.443 kb on + strand, within pilM at 4358.443 kb on + strand, within pilM at 4358.444 kb on - strand, within pilM at 4358.444 kb on - strand, within pilM at 4358.444 kb on - strand, within pilM at 4358.520 kb on - strand, within pilM at 4358.614 kb on - strand, within pilM at 4358.655 kb on + strand, within pilM at 4358.660 kb on - strand, within pilM at 4358.728 kb on + strand, within pilM at 4358.786 kb on - strand at 4358.786 kb on - strand at 4358.786 kb on - strand at 4358.786 kb on - strand at 4358.812 kb on - strand at 4358.919 kb on + strand at 4358.936 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 4,356,997 + LU632_RS22885 0.15 +0.4 4,357,021 + LU632_RS22885 0.20 +0.1 4,357,021 + LU632_RS22885 0.20 +0.1 4,357,021 + LU632_RS22885 0.20 +0.1 4,357,021 + LU632_RS22885 0.20 +0.2 4,357,022 - LU632_RS22885 0.20 -0.4 4,357,022 - LU632_RS22885 0.20 -0.4 4,357,022 - LU632_RS22885 0.20 -0.3 4,357,022 - LU632_RS22885 0.20 -0.1 4,357,086 + LU632_RS22885 0.33 +0.3 4,357,126 - LU632_RS22885 0.41 -1.5 4,357,126 - LU632_RS22885 0.41 -0.3 4,357,188 + LU632_RS22885 0.53 -0.6 4,357,188 + LU632_RS22885 0.53 +0.2 4,357,207 + LU632_RS22885 0.57 -1.1 4,357,251 + LU632_RS22885 0.66 -0.8 4,357,252 - LU632_RS22885 0.66 +0.6 4,357,252 - LU632_RS22885 0.66 +0.5 4,357,252 - LU632_RS22885 0.66 +0.3 4,357,321 + LU632_RS22885 0.80 +0.1 4,357,322 - LU632_RS22885 0.80 -0.4 4,357,391 + -0.3 4,357,414 - -0.6 4,357,550 - LU632_RS22890 0.24 -0.1 4,357,626 - LU632_RS22890 0.37 -0.9 4,357,838 + LU632_RS22890 0.73 -0.8 4,357,839 - LU632_RS22890 0.73 +0.2 4,357,839 - LU632_RS22890 0.73 +0.1 4,357,839 - LU632_RS22890 0.73 +0.7 4,357,958 + +0.2 4,358,171 + pilM LU632_RS22895 0.21 +0.5 4,358,171 + pilM LU632_RS22895 0.21 +0.5 4,358,249 + pilM LU632_RS22895 0.31 +1.2 4,358,250 - pilM LU632_RS22895 0.31 +1.8 4,358,250 - pilM LU632_RS22895 0.31 +0.1 4,358,307 + pilM LU632_RS22895 0.38 -0.3 4,358,307 + pilM LU632_RS22895 0.38 -0.4 4,358,308 - pilM LU632_RS22895 0.38 +0.5 4,358,308 - pilM LU632_RS22895 0.38 +0.5 4,358,308 - pilM LU632_RS22895 0.38 -0.8 4,358,308 - pilM LU632_RS22895 0.38 +0.1 4,358,308 - pilM LU632_RS22895 0.38 -1.9 4,358,428 + pilM LU632_RS22895 0.52 +0.2 4,358,443 + pilM LU632_RS22895 0.54 +0.2 4,358,443 + pilM LU632_RS22895 0.54 +0.0 4,358,443 + pilM LU632_RS22895 0.54 -0.2 4,358,444 - pilM LU632_RS22895 0.54 -0.1 4,358,444 - pilM LU632_RS22895 0.54 -1.1 4,358,444 - pilM LU632_RS22895 0.54 +0.2 4,358,520 - pilM LU632_RS22895 0.64 -0.2 4,358,614 - pilM LU632_RS22895 0.75 -0.1 4,358,655 + pilM LU632_RS22895 0.80 -0.5 4,358,660 - pilM LU632_RS22895 0.80 +0.2 4,358,728 + pilM LU632_RS22895 0.89 +0.7 4,358,786 - -0.3 4,358,786 - -0.2 4,358,786 - -0.1 4,358,786 - +0.2 4,358,812 - +1.8 4,358,919 + +0.4 4,358,936 + -0.2
Or see this region's nucleotide sequence