Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt kefB and kefG are separated by 0 nucleotides kefG and LU632_RS22745 are separated by 228 nucleotides LU632_RS22745 and tauD are separated by 241 nucleotides
LU632_RS22735: kefB - glutathione-regulated potassium-efflux system protein KefB, at 4,326,965 to 4,328,770
kefB
LU632_RS22740: kefG - glutathione-regulated potassium-efflux system ancillary protein KefG, at 4,328,771 to 4,329,322
kefG
LU632_RS22745: LU632_RS22745 - ABC transporter ATP-binding protein, at 4,329,551 to 4,331,458
_RS22745
LU632_RS22750: tauD - taurine dioxygenase, at 4,331,700 to 4,332,539
tauD
Position (kb) 4329
4330
4331
4332 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4328.623 kb on + strand at 4328.717 kb on + strand at 4328.717 kb on + strand at 4328.718 kb on - strand at 4328.718 kb on - strand at 4328.865 kb on + strand, within kefG at 4328.865 kb on + strand, within kefG at 4328.866 kb on - strand, within kefG at 4328.869 kb on + strand, within kefG at 4328.930 kb on - strand, within kefG at 4328.930 kb on - strand, within kefG at 4328.944 kb on + strand, within kefG at 4328.944 kb on + strand, within kefG at 4328.944 kb on + strand, within kefG at 4328.944 kb on + strand, within kefG at 4328.944 kb on + strand, within kefG at 4328.944 kb on + strand, within kefG at 4328.944 kb on + strand, within kefG at 4328.944 kb on + strand, within kefG at 4328.945 kb on - strand, within kefG at 4328.945 kb on - strand, within kefG at 4328.945 kb on - strand, within kefG at 4328.945 kb on - strand, within kefG at 4328.945 kb on - strand, within kefG at 4328.945 kb on - strand, within kefG at 4328.945 kb on - strand, within kefG at 4328.946 kb on + strand, within kefG at 4328.946 kb on + strand, within kefG at 4328.947 kb on - strand, within kefG at 4329.103 kb on + strand, within kefG at 4329.103 kb on + strand, within kefG at 4329.104 kb on - strand, within kefG at 4329.104 kb on - strand, within kefG at 4329.104 kb on - strand, within kefG at 4329.104 kb on - strand, within kefG at 4329.104 kb on - strand, within kefG at 4329.105 kb on + strand, within kefG at 4329.105 kb on + strand, within kefG at 4329.105 kb on + strand, within kefG at 4329.106 kb on - strand, within kefG at 4329.106 kb on - strand, within kefG at 4329.109 kb on + strand, within kefG at 4329.109 kb on + strand, within kefG at 4329.110 kb on - strand, within kefG at 4329.110 kb on - strand, within kefG at 4329.110 kb on - strand, within kefG at 4329.111 kb on + strand, within kefG at 4329.150 kb on - strand, within kefG at 4329.172 kb on + strand, within kefG at 4329.291 kb on + strand at 4329.291 kb on + strand at 4329.291 kb on + strand at 4329.292 kb on - strand at 4329.292 kb on - strand at 4329.402 kb on - strand at 4329.405 kb on + strand at 4329.406 kb on - strand at 4329.425 kb on + strand at 4329.425 kb on + strand at 4329.426 kb on - strand at 4329.426 kb on - strand at 4329.427 kb on + strand at 4329.437 kb on - strand at 4329.470 kb on + strand at 4329.478 kb on + strand at 4329.509 kb on + strand at 4329.509 kb on + strand at 4329.530 kb on - strand at 4329.538 kb on + strand at 4329.538 kb on + strand at 4329.542 kb on - strand at 4329.550 kb on + strand at 4329.576 kb on + strand at 4329.576 kb on + strand at 4329.577 kb on - strand at 4329.577 kb on - strand at 4329.622 kb on + strand at 4329.691 kb on + strand at 4329.692 kb on - strand at 4329.702 kb on + strand at 4329.722 kb on - strand at 4329.722 kb on - strand at 4329.723 kb on - strand at 4329.797 kb on + strand, within LU632_RS22745 at 4329.797 kb on + strand, within LU632_RS22745 at 4329.798 kb on - strand, within LU632_RS22745 at 4329.861 kb on + strand, within LU632_RS22745 at 4329.862 kb on - strand, within LU632_RS22745 at 4329.924 kb on + strand, within LU632_RS22745 at 4329.925 kb on - strand, within LU632_RS22745 at 4329.925 kb on - strand, within LU632_RS22745 at 4329.978 kb on + strand, within LU632_RS22745 at 4329.978 kb on + strand, within LU632_RS22745 at 4330.230 kb on - strand, within LU632_RS22745 at 4330.230 kb on - strand, within LU632_RS22745 at 4330.241 kb on + strand, within LU632_RS22745 at 4330.242 kb on - strand, within LU632_RS22745 at 4330.435 kb on + strand, within LU632_RS22745 at 4330.435 kb on + strand, within LU632_RS22745 at 4330.445 kb on - strand, within LU632_RS22745 at 4330.600 kb on + strand, within LU632_RS22745 at 4330.655 kb on - strand, within LU632_RS22745 at 4330.787 kb on + strand, within LU632_RS22745 at 4330.938 kb on + strand, within LU632_RS22745 at 4330.943 kb on - strand, within LU632_RS22745 at 4331.116 kb on - strand, within LU632_RS22745 at 4331.318 kb on - strand at 4331.321 kb on + strand at 4331.322 kb on - strand at 4331.430 kb on + strand at 4331.430 kb on + strand at 4331.466 kb on + strand at 4331.467 kb on - strand at 4331.467 kb on - strand at 4331.470 kb on - strand at 4331.537 kb on - strand at 4331.723 kb on + strand at 4331.723 kb on + strand at 4331.723 kb on + strand at 4331.724 kb on - strand at 4331.724 kb on - strand at 4331.724 kb on - strand at 4331.759 kb on - strand at 4331.833 kb on - strand, within tauD at 4331.852 kb on + strand, within tauD at 4331.852 kb on + strand, within tauD at 4331.933 kb on + strand, within tauD at 4331.969 kb on + strand, within tauD at 4331.973 kb on + strand, within tauD at 4331.974 kb on - strand, within tauD at 4331.974 kb on - strand, within tauD at 4331.974 kb on - strand, within tauD at 4332.054 kb on - strand, within tauD at 4332.054 kb on - strand, within tauD at 4332.136 kb on + strand, within tauD at 4332.136 kb on + strand, within tauD at 4332.164 kb on + strand, within tauD at 4332.164 kb on + strand, within tauD at 4332.164 kb on + strand, within tauD at 4332.165 kb on - strand, within tauD at 4332.165 kb on - strand, within tauD at 4332.165 kb on - strand, within tauD at 4332.221 kb on + strand, within tauD at 4332.235 kb on - strand, within tauD at 4332.322 kb on + strand, within tauD at 4332.433 kb on + strand, within tauD at 4332.433 kb on + strand, within tauD
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 4,328,623 + +0.2 4,328,717 + +1.2 4,328,717 + -0.7 4,328,718 - -0.0 4,328,718 - -0.5 4,328,865 + kefG LU632_RS22740 0.17 +1.3 4,328,865 + kefG LU632_RS22740 0.17 -0.0 4,328,866 - kefG LU632_RS22740 0.17 +0.4 4,328,869 + kefG LU632_RS22740 0.18 +0.2 4,328,930 - kefG LU632_RS22740 0.29 +0.3 4,328,930 - kefG LU632_RS22740 0.29 +0.2 4,328,944 + kefG LU632_RS22740 0.31 +1.0 4,328,944 + kefG LU632_RS22740 0.31 +0.5 4,328,944 + kefG LU632_RS22740 0.31 +0.7 4,328,944 + kefG LU632_RS22740 0.31 -0.1 4,328,944 + kefG LU632_RS22740 0.31 +0.3 4,328,944 + kefG LU632_RS22740 0.31 +0.9 4,328,944 + kefG LU632_RS22740 0.31 +1.3 4,328,944 + kefG LU632_RS22740 0.31 +1.4 4,328,945 - kefG LU632_RS22740 0.32 -0.1 4,328,945 - kefG LU632_RS22740 0.32 +1.4 4,328,945 - kefG LU632_RS22740 0.32 -0.2 4,328,945 - kefG LU632_RS22740 0.32 -0.6 4,328,945 - kefG LU632_RS22740 0.32 -0.4 4,328,945 - kefG LU632_RS22740 0.32 -0.6 4,328,945 - kefG LU632_RS22740 0.32 -0.2 4,328,946 + kefG LU632_RS22740 0.32 -2.4 4,328,946 + kefG LU632_RS22740 0.32 +0.1 4,328,947 - kefG LU632_RS22740 0.32 +0.2 4,329,103 + kefG LU632_RS22740 0.60 -0.6 4,329,103 + kefG LU632_RS22740 0.60 +0.8 4,329,104 - kefG LU632_RS22740 0.60 +0.8 4,329,104 - kefG LU632_RS22740 0.60 +0.6 4,329,104 - kefG LU632_RS22740 0.60 +1.0 4,329,104 - kefG LU632_RS22740 0.60 +0.2 4,329,104 - kefG LU632_RS22740 0.60 +0.5 4,329,105 + kefG LU632_RS22740 0.61 +0.0 4,329,105 + kefG LU632_RS22740 0.61 -0.1 4,329,105 + kefG LU632_RS22740 0.61 +1.4 4,329,106 - kefG LU632_RS22740 0.61 +0.8 4,329,106 - kefG LU632_RS22740 0.61 +0.7 4,329,109 + kefG LU632_RS22740 0.61 +0.3 4,329,109 + kefG LU632_RS22740 0.61 -0.3 4,329,110 - kefG LU632_RS22740 0.61 -0.1 4,329,110 - kefG LU632_RS22740 0.61 +1.0 4,329,110 - kefG LU632_RS22740 0.61 +0.5 4,329,111 + kefG LU632_RS22740 0.62 +0.2 4,329,150 - kefG LU632_RS22740 0.69 +0.7 4,329,172 + kefG LU632_RS22740 0.73 +0.2 4,329,291 + -0.3 4,329,291 + -0.0 4,329,291 + +0.6 4,329,292 - +0.5 4,329,292 - +0.1 4,329,402 - -1.3 4,329,405 + +0.3 4,329,406 - -1.8 4,329,425 + -1.3 4,329,425 + -0.5 4,329,426 - -2.2 4,329,426 - -1.2 4,329,427 + -1.5 4,329,437 - -2.2 4,329,470 + +0.6 4,329,478 + -0.0 4,329,509 + -0.1 4,329,509 + -0.2 4,329,530 - -2.2 4,329,538 + +1.2 4,329,538 + +0.0 4,329,542 - -1.6 4,329,550 + -1.2 4,329,576 + +1.8 4,329,576 + -0.3 4,329,577 - -3.7 4,329,577 - -0.8 4,329,622 + +0.2 4,329,691 + -0.2 4,329,692 - -0.8 4,329,702 + -0.4 4,329,722 - -0.2 4,329,722 - -1.6 4,329,723 - +0.2 4,329,797 + LU632_RS22745 0.13 +0.0 4,329,797 + LU632_RS22745 0.13 -0.2 4,329,798 - LU632_RS22745 0.13 -0.5 4,329,861 + LU632_RS22745 0.16 +1.3 4,329,862 - LU632_RS22745 0.16 -0.2 4,329,924 + LU632_RS22745 0.20 +0.2 4,329,925 - LU632_RS22745 0.20 -0.4 4,329,925 - LU632_RS22745 0.20 +0.0 4,329,978 + LU632_RS22745 0.22 +0.6 4,329,978 + LU632_RS22745 0.22 -0.3 4,330,230 - LU632_RS22745 0.36 -2.2 4,330,230 - LU632_RS22745 0.36 -1.5 4,330,241 + LU632_RS22745 0.36 -0.3 4,330,242 - LU632_RS22745 0.36 -0.6 4,330,435 + LU632_RS22745 0.46 -0.8 4,330,435 + LU632_RS22745 0.46 +0.1 4,330,445 - LU632_RS22745 0.47 -0.8 4,330,600 + LU632_RS22745 0.55 -0.4 4,330,655 - LU632_RS22745 0.58 -2.0 4,330,787 + LU632_RS22745 0.65 -0.2 4,330,938 + LU632_RS22745 0.73 +0.1 4,330,943 - LU632_RS22745 0.73 -2.2 4,331,116 - LU632_RS22745 0.82 -0.3 4,331,318 - +0.4 4,331,321 + +0.3 4,331,322 - +0.2 4,331,430 + -0.5 4,331,430 + -1.1 4,331,466 + +0.2 4,331,467 - +0.6 4,331,467 - -0.3 4,331,470 - -0.7 4,331,537 - +0.7 4,331,723 + -0.6 4,331,723 + +0.2 4,331,723 + +0.6 4,331,724 - +0.7 4,331,724 - -1.9 4,331,724 - +1.7 4,331,759 - +0.0 4,331,833 - tauD LU632_RS22750 0.16 -0.2 4,331,852 + tauD LU632_RS22750 0.18 -0.3 4,331,852 + tauD LU632_RS22750 0.18 -1.1 4,331,933 + tauD LU632_RS22750 0.28 -0.9 4,331,969 + tauD LU632_RS22750 0.32 +0.1 4,331,973 + tauD LU632_RS22750 0.33 -0.5 4,331,974 - tauD LU632_RS22750 0.33 -0.1 4,331,974 - tauD LU632_RS22750 0.33 -0.5 4,331,974 - tauD LU632_RS22750 0.33 -0.8 4,332,054 - tauD LU632_RS22750 0.42 -0.4 4,332,054 - tauD LU632_RS22750 0.42 +0.1 4,332,136 + tauD LU632_RS22750 0.52 +0.6 4,332,136 + tauD LU632_RS22750 0.52 -0.2 4,332,164 + tauD LU632_RS22750 0.55 -0.1 4,332,164 + tauD LU632_RS22750 0.55 +0.1 4,332,164 + tauD LU632_RS22750 0.55 +0.0 4,332,165 - tauD LU632_RS22750 0.55 +0.2 4,332,165 - tauD LU632_RS22750 0.55 -0.2 4,332,165 - tauD LU632_RS22750 0.55 -0.2 4,332,221 + tauD LU632_RS22750 0.62 -0.0 4,332,235 - tauD LU632_RS22750 0.64 -0.3 4,332,322 + tauD LU632_RS22750 0.74 -0.2 4,332,433 + tauD LU632_RS22750 0.87 +0.5 4,332,433 + tauD LU632_RS22750 0.87 -0.9
Or see this region's nucleotide sequence