Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16935

Experiment: HBM-Glucose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	HBM-Glucose
3,190,913	-				-0.2
3,191,693	-				-0.5
3,191,743	+				+0.4
3,191,750	-				+0.7
3,191,826	+				+0.1
3,191,904	-				-0.0
3,191,916	+				+0.3
3,191,916	+				-0.1
3,192,004	-				-0.2
3,192,072	+				-1.4
3,192,073	-				+0.4
3,192,073	-				-1.1
3,192,073	-				-0.1
3,192,084	+				+0.3
3,192,094	-				-1.0
3,192,094	-				+0.2
3,192,096	-				+0.3
3,192,118	-				-0.1
3,192,166	-	clpB	LU632_RS16935	0.10	-0.4
3,192,196	+	clpB	LU632_RS16935	0.11	+1.3
3,192,196	+	clpB	LU632_RS16935	0.11	-1.9
3,192,197	-	clpB	LU632_RS16935	0.11	-0.4
3,192,281	-	clpB	LU632_RS16935	0.15	-1.0
3,192,321	+	clpB	LU632_RS16935	0.16	+1.7
3,192,330	+	clpB	LU632_RS16935	0.17	+0.0
3,192,330	+	clpB	LU632_RS16935	0.17	-0.9
3,192,494	+	clpB	LU632_RS16935	0.23	+0.4
3,192,516	+	clpB	LU632_RS16935	0.24	+0.3
3,192,517	-	clpB	LU632_RS16935	0.24	-0.1
3,192,535	+	clpB	LU632_RS16935	0.24	-0.8
3,192,535	+	clpB	LU632_RS16935	0.24	+0.6
3,192,536	-	clpB	LU632_RS16935	0.25	-0.1
3,192,536	-	clpB	LU632_RS16935	0.25	-0.3
3,192,577	-	clpB	LU632_RS16935	0.26	-1.7
3,192,587	-	clpB	LU632_RS16935	0.26	+0.6
3,192,587	-	clpB	LU632_RS16935	0.26	+0.2
3,192,631	-	clpB	LU632_RS16935	0.28	-0.6
3,192,634	+	clpB	LU632_RS16935	0.28	+0.8
3,192,634	+	clpB	LU632_RS16935	0.28	-0.5
3,192,635	-	clpB	LU632_RS16935	0.28	-0.3
3,192,635	-	clpB	LU632_RS16935	0.28	+0.7
3,192,778	+	clpB	LU632_RS16935	0.34	+0.0
3,192,779	-	clpB	LU632_RS16935	0.34	+0.2
3,192,859	+	clpB	LU632_RS16935	0.37	+0.4
3,192,860	-	clpB	LU632_RS16935	0.37	-0.3
3,192,892	-	clpB	LU632_RS16935	0.38	-0.3
3,193,149	+	clpB	LU632_RS16935	0.48	+0.3
3,193,269	+	clpB	LU632_RS16935	0.53	-0.4
3,193,269	+	clpB	LU632_RS16935	0.53	+0.4
3,193,270	-	clpB	LU632_RS16935	0.53	+0.1
3,193,303	+	clpB	LU632_RS16935	0.54	-0.2
3,193,305	+	clpB	LU632_RS16935	0.54	+1.6
3,193,306	-	clpB	LU632_RS16935	0.54	+0.3
3,193,338	-	clpB	LU632_RS16935	0.56	+0.3
3,193,338	-	clpB	LU632_RS16935	0.56	-0.2
3,193,426	+	clpB	LU632_RS16935	0.59	+0.2
3,193,426	+	clpB	LU632_RS16935	0.59	-0.0
3,193,426	+	clpB	LU632_RS16935	0.59	+0.8
3,193,511	+	clpB	LU632_RS16935	0.62	+0.3
3,193,512	-	clpB	LU632_RS16935	0.62	+0.7
3,193,533	+	clpB	LU632_RS16935	0.63	+0.3
3,193,552	+	clpB	LU632_RS16935	0.64	-0.2
3,193,552	+	clpB	LU632_RS16935	0.64	-0.4
3,193,552	+	clpB	LU632_RS16935	0.64	+0.4
3,193,553	-	clpB	LU632_RS16935	0.64	+0.2
3,193,579	-	clpB	LU632_RS16935	0.65	-0.4
3,193,584	+	clpB	LU632_RS16935	0.65	-0.3
3,193,584	+	clpB	LU632_RS16935	0.65	+0.1
3,193,584	+	clpB	LU632_RS16935	0.65	-0.6
3,193,632	+	clpB	LU632_RS16935	0.67	-0.9
3,193,656	+	clpB	LU632_RS16935	0.68	-0.3
3,193,657	-	clpB	LU632_RS16935	0.68	+0.1
3,193,725	-	clpB	LU632_RS16935	0.70	-2.1
3,193,728	+	clpB	LU632_RS16935	0.71	+1.3
3,193,728	+	clpB	LU632_RS16935	0.71	-0.3
3,193,729	-	clpB	LU632_RS16935	0.71	+0.5
3,193,807	-	clpB	LU632_RS16935	0.74	-0.7
3,193,864	-	clpB	LU632_RS16935	0.76	-0.7
3,193,915	+	clpB	LU632_RS16935	0.78	-0.3
3,193,985	+	clpB	LU632_RS16935	0.81	-0.2
3,194,197	+	clpB	LU632_RS16935	0.89	+0.6
3,194,198	-	clpB	LU632_RS16935	0.89	-0.3
3,194,198	-	clpB	LU632_RS16935	0.89	+0.1
3,194,203	-	clpB	LU632_RS16935	0.89	+0.3
3,194,233	+				+0.1
3,194,234	-				+0.1
3,194,234	-				-0.5
3,194,234	-				-0.1
3,194,234	-				-1.2
3,194,234	-				-0.3
3,194,289	+				-0.0
3,194,325	+				+0.4
3,194,325	+				+0.8
3,194,325	+				+0.3
3,194,329	+				+1.0
3,194,329	+				-0.8
3,194,330	-				+0.1
3,194,330	-				-1.7
3,194,373	+				+0.1
3,194,374	-				-0.2
3,194,374	-				-1.2
3,194,374	-				+0.3
3,194,457	+				-0.1
3,194,457	+				-0.0
3,194,457	+				-0.2
3,194,476	-				-1.4
3,194,543	-				-0.3
3,194,602	+				-0.4
3,194,603	-				-0.4
3,194,605	-				+1.2
3,194,762	-	pgeF	LU632_RS16940	0.22	+0.9
3,194,762	-	pgeF	LU632_RS16940	0.22	-0.4
3,194,764	+	pgeF	LU632_RS16940	0.22	+0.3
3,194,764	+	pgeF	LU632_RS16940	0.22	+0.6
3,194,764	+	pgeF	LU632_RS16940	0.22	-0.9
3,194,765	-	pgeF	LU632_RS16940	0.22	+0.2
3,194,765	-	pgeF	LU632_RS16940	0.22	+0.5
3,194,765	-	pgeF	LU632_RS16940	0.22	+0.2
3,194,864	+	pgeF	LU632_RS16940	0.36	+0.3
3,194,886	+	pgeF	LU632_RS16940	0.39	+1.0
3,194,886	+	pgeF	LU632_RS16940	0.39	+0.3
3,194,886	+	pgeF	LU632_RS16940	0.39	+0.6
3,194,887	-	pgeF	LU632_RS16940	0.39	-0.2
3,194,887	-	pgeF	LU632_RS16940	0.39	-0.3
3,194,887	-	pgeF	LU632_RS16940	0.39	+0.0
3,194,888	+	pgeF	LU632_RS16940	0.39	+0.4
3,194,889	-	pgeF	LU632_RS16940	0.40	+0.4
3,195,000	+	pgeF	LU632_RS16940	0.55	+0.2
3,195,000	+	pgeF	LU632_RS16940	0.55	-0.1
3,195,001	-	pgeF	LU632_RS16940	0.55	+0.0
3,195,028	-	pgeF	LU632_RS16940	0.59	+0.0
3,195,056	+	pgeF	LU632_RS16940	0.62	+0.1
3,195,058	+	pgeF	LU632_RS16940	0.63	+0.6
3,195,058	+	pgeF	LU632_RS16940	0.63	+0.3
3,195,058	+	pgeF	LU632_RS16940	0.63	-0.3
3,195,059	-	pgeF	LU632_RS16940	0.63	-0.2
3,195,108	+	pgeF	LU632_RS16940	0.70	-0.7
3,195,109	-	pgeF	LU632_RS16940	0.70	+0.0
3,195,109	-	pgeF	LU632_RS16940	0.70	+0.3
3,195,153	+	pgeF	LU632_RS16940	0.76	+0.0
3,195,175	+	pgeF	LU632_RS16940	0.79	+0.0
3,195,175	+	pgeF	LU632_RS16940	0.79	-0.1
3,195,176	-	pgeF	LU632_RS16940	0.79	-0.4
3,195,176	-	pgeF	LU632_RS16940	0.79	+0.0
3,195,231	+	pgeF	LU632_RS16940	0.86	-0.2
3,195,289	-				+0.1
3,195,349	+				+0.2
3,195,362	-				-0.3
3,195,439	+	rluD	LU632_RS16945	0.11	-0.4
3,195,447	+	rluD	LU632_RS16945	0.12	-1.7
3,195,448	-	rluD	LU632_RS16945	0.12	-1.5
3,195,448	-	rluD	LU632_RS16945	0.12	-0.4
3,195,448	-	rluD	LU632_RS16945	0.12	-0.4
3,195,449	+	rluD	LU632_RS16945	0.12	-1.4
3,195,450	-	rluD	LU632_RS16945	0.12	-1.5
3,195,450	-	rluD	LU632_RS16945	0.12	-1.0