Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS14895 and LU632_RS14900 are separated by 242 nucleotides LU632_RS14900 and LU632_RS14905 are separated by 17 nucleotides LU632_RS14905 and LU632_RS14910 are separated by 45 nucleotides
LU632_RS14895: LU632_RS14895 - integrase arm-type DNA-binding domain-containing protein, at 2,833,503 to 2,834,711
_RS14895
LU632_RS14900: LU632_RS14900 - site-specific DNA-methyltransferase, at 2,834,954 to 2,835,283
_RS14900
LU632_RS14905: LU632_RS14905 - IS1 family transposase, at 2,835,301 to 2,835,998
_RS14905
LU632_RS14910: LU632_RS14910 - hypothetical protein, at 2,836,044 to 2,836,682
_RS14910
Position (kb)
2834
2835
2836 Strain fitness (log2 ratio)
-2
-1
0
1 at 2834.192 kb on - strand, within LU632_RS14895 at 2834.570 kb on - strand, within LU632_RS14895 at 2834.570 kb on - strand, within LU632_RS14895 at 2834.570 kb on - strand, within LU632_RS14895 at 2834.570 kb on - strand, within LU632_RS14895 at 2835.267 kb on + strand at 2836.023 kb on + strand at 2836.100 kb on + strand at 2836.134 kb on + strand, within LU632_RS14910 at 2836.134 kb on + strand, within LU632_RS14910 at 2836.134 kb on + strand, within LU632_RS14910 at 2836.135 kb on - strand, within LU632_RS14910 at 2836.135 kb on - strand, within LU632_RS14910 at 2836.136 kb on + strand, within LU632_RS14910 at 2836.154 kb on + strand, within LU632_RS14910 at 2836.209 kb on - strand, within LU632_RS14910
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 2,834,192 - LU632_RS14895 0.57 -0.0 2,834,570 - LU632_RS14895 0.88 +0.5 2,834,570 - LU632_RS14895 0.88 +0.5 2,834,570 - LU632_RS14895 0.88 -2.5 2,834,570 - LU632_RS14895 0.88 +0.1 2,835,267 + -0.8 2,836,023 + -0.2 2,836,100 + +0.3 2,836,134 + LU632_RS14910 0.14 +1.1 2,836,134 + LU632_RS14910 0.14 -0.1 2,836,134 + LU632_RS14910 0.14 -1.1 2,836,135 - LU632_RS14910 0.14 -0.2 2,836,135 - LU632_RS14910 0.14 -0.8 2,836,136 + LU632_RS14910 0.14 +0.4 2,836,154 + LU632_RS14910 0.17 +0.4 2,836,209 - LU632_RS14910 0.26 +0.2
Or see this region's nucleotide sequence