Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS10170 and LU632_RS10175 are separated by 19 nucleotides LU632_RS10175 and LU632_RS10180 are separated by 172 nucleotides LU632_RS10180 and LU632_RS10185 are separated by 240 nucleotides LU632_RS10185 and uvrY are separated by 285 nucleotides
LU632_RS10170: LU632_RS10170 - autoinducer binding domain-containing protein, at 1,948,066 to 1,948,464
_RS10170
LU632_RS10175: LU632_RS10175 - LuxR C-terminal-related transcriptional regulator, at 1,948,484 to 1,948,636
_RS10175
LU632_RS10180: LU632_RS10180 - autoinducer synthase, at 1,948,809 to 1,949,438
_RS10180
LU632_RS10185: LU632_RS10185 - tail fiber assembly protein, at 1,949,679 to 1,949,855
_RS10185
LU632_RS10190: uvrY - UvrY/SirA/GacA family response regulator transcription factor, at 1,950,141 to 1,950,800
uvrY
Position (kb) 1948
1949
1950 Strain fitness (log2 ratio) -1
0
1
2 at 1947.845 kb on + strand at 1947.846 kb on - strand at 1947.868 kb on + strand at 1948.015 kb on + strand at 1948.090 kb on + strand at 1948.091 kb on - strand at 1948.145 kb on - strand, within LU632_RS10170 at 1948.215 kb on + strand, within LU632_RS10170 at 1948.424 kb on + strand, within LU632_RS10170 at 1948.425 kb on - strand at 1948.425 kb on - strand at 1948.426 kb on + strand at 1948.427 kb on - strand at 1948.452 kb on + strand at 1948.491 kb on + strand at 1948.675 kb on + strand at 1948.760 kb on - strand at 1948.804 kb on + strand at 1948.805 kb on - strand at 1948.810 kb on - strand at 1948.817 kb on + strand at 1948.818 kb on - strand at 1948.821 kb on + strand at 1948.838 kb on + strand at 1948.838 kb on + strand at 1948.838 kb on + strand at 1948.944 kb on + strand, within LU632_RS10180 at 1949.212 kb on - strand, within LU632_RS10180 at 1949.317 kb on + strand, within LU632_RS10180 at 1949.317 kb on + strand, within LU632_RS10180 at 1949.547 kb on + strand at 1949.552 kb on + strand at 1949.655 kb on + strand at 1949.657 kb on + strand at 1949.744 kb on + strand, within LU632_RS10185 at 1949.745 kb on - strand, within LU632_RS10185 at 1949.907 kb on - strand at 1949.970 kb on - strand at 1949.974 kb on + strand at 1950.026 kb on + strand at 1950.058 kb on + strand at 1950.096 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 1,947,845 + +2.4 1,947,846 - -0.1 1,947,868 + +0.6 1,948,015 + -0.3 1,948,090 + -0.5 1,948,091 - -0.4 1,948,145 - LU632_RS10170 0.20 -1.3 1,948,215 + LU632_RS10170 0.37 -0.6 1,948,424 + LU632_RS10170 0.90 -0.4 1,948,425 - +0.2 1,948,425 - +0.2 1,948,426 + -0.6 1,948,427 - +0.1 1,948,452 + -0.6 1,948,491 + +0.2 1,948,675 + -0.3 1,948,760 - +0.4 1,948,804 + +0.5 1,948,805 - -0.7 1,948,810 - -0.3 1,948,817 + -0.2 1,948,818 - -0.1 1,948,821 + -0.2 1,948,838 + -0.1 1,948,838 + +1.0 1,948,838 + +0.4 1,948,944 + LU632_RS10180 0.21 +0.3 1,949,212 - LU632_RS10180 0.64 +0.6 1,949,317 + LU632_RS10180 0.81 -0.1 1,949,317 + LU632_RS10180 0.81 -1.4 1,949,547 + +0.7 1,949,552 + -0.5 1,949,655 + +0.6 1,949,657 + -0.2 1,949,744 + LU632_RS10185 0.37 +0.0 1,949,745 - LU632_RS10185 0.37 +1.0 1,949,907 - -0.4 1,949,970 - +0.4 1,949,974 + +0.0 1,950,026 + +1.0 1,950,058 + +0.5 1,950,096 + -1.0
Or see this region's nucleotide sequence