Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09120

Experiment: HBM-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS09115 and LU632_RS09120 are separated by 22 nucleotidesLU632_RS09120 and bioA overlap by 10 nucleotides LU632_RS09115: LU632_RS09115 - fimbrial biogenesis outer membrane usher protein, at 1,714,167 to 1,716,689 _RS09115 LU632_RS09120: LU632_RS09120 - fimbrial protein, at 1,716,712 to 1,717,761 _RS09120 LU632_RS09125: bioA - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 1,717,752 to 1,719,053 bioA Position (kb) 1716 1717 1718Strain fitness (log2 ratio) -1 0 1at 1715.782 kb on - strand, within LU632_RS09115at 1715.856 kb on + strand, within LU632_RS09115at 1715.858 kb on - strand, within LU632_RS09115at 1715.955 kb on + strand, within LU632_RS09115at 1715.956 kb on - strand, within LU632_RS09115at 1715.956 kb on - strand, within LU632_RS09115at 1715.956 kb on - strand, within LU632_RS09115at 1715.956 kb on - strand, within LU632_RS09115at 1715.956 kb on - strand, within LU632_RS09115at 1715.956 kb on - strand, within LU632_RS09115at 1716.003 kb on + strand, within LU632_RS09115at 1716.003 kb on + strand, within LU632_RS09115at 1716.004 kb on - strand, within LU632_RS09115at 1716.004 kb on - strand, within LU632_RS09115at 1716.015 kb on + strand, within LU632_RS09115at 1716.016 kb on - strand, within LU632_RS09115at 1716.078 kb on + strand, within LU632_RS09115at 1716.197 kb on + strand, within LU632_RS09115at 1716.197 kb on + strand, within LU632_RS09115at 1716.198 kb on - strand, within LU632_RS09115at 1716.309 kb on - strand, within LU632_RS09115at 1716.412 kb on - strand, within LU632_RS09115at 1716.550 kb on + strandat 1716.550 kb on + strandat 1716.550 kb on + strandat 1716.550 kb on + strandat 1716.550 kb on + strandat 1716.550 kb on + strandat 1716.551 kb on - strandat 1716.551 kb on - strandat 1716.551 kb on - strandat 1716.551 kb on - strandat 1716.552 kb on + strandat 1716.552 kb on + strandat 1716.552 kb on + strandat 1716.552 kb on + strandat 1716.552 kb on + strandat 1716.552 kb on + strandat 1716.552 kb on + strandat 1716.553 kb on - strandat 1716.554 kb on + strandat 1716.554 kb on + strandat 1716.554 kb on + strandat 1716.554 kb on + strandat 1716.555 kb on - strandat 1716.555 kb on - strandat 1716.615 kb on - strandat 1716.681 kb on + strandat 1716.707 kb on + strandat 1716.721 kb on - strandat 1716.731 kb on + strandat 1716.733 kb on + strandat 1716.733 kb on + strandat 1716.733 kb on + strandat 1716.733 kb on + strandat 1716.734 kb on + strandat 1716.734 kb on - strandat 1716.734 kb on - strandat 1716.738 kb on + strandat 1716.738 kb on + strandat 1716.738 kb on + strandat 1716.739 kb on - strandat 1716.739 kb on - strandat 1716.739 kb on - strandat 1716.739 kb on - strandat 1716.935 kb on - strand, within LU632_RS09120at 1717.014 kb on + strand, within LU632_RS09120at 1717.021 kb on + strand, within LU632_RS09120at 1717.021 kb on + strand, within LU632_RS09120at 1717.023 kb on + strand, within LU632_RS09120at 1717.024 kb on - strand, within LU632_RS09120at 1717.024 kb on - strand, within LU632_RS09120at 1717.039 kb on + strand, within LU632_RS09120at 1717.081 kb on + strand, within LU632_RS09120at 1717.081 kb on + strand, within LU632_RS09120at 1717.081 kb on + strand, within LU632_RS09120at 1717.082 kb on - strand, within LU632_RS09120at 1717.082 kb on - strand, within LU632_RS09120at 1717.135 kb on + strand, within LU632_RS09120at 1717.135 kb on + strand, within LU632_RS09120at 1717.135 kb on + strand, within LU632_RS09120at 1717.136 kb on - strand, within LU632_RS09120at 1717.138 kb on + strand, within LU632_RS09120at 1717.138 kb on + strand, within LU632_RS09120at 1717.138 kb on + strand, within LU632_RS09120at 1717.139 kb on - strand, within LU632_RS09120at 1717.139 kb on - strand, within LU632_RS09120at 1717.143 kb on + strand, within LU632_RS09120at 1717.143 kb on + strand, within LU632_RS09120at 1717.143 kb on + strand, within LU632_RS09120at 1717.144 kb on - strand, within LU632_RS09120at 1717.144 kb on - strand, within LU632_RS09120at 1717.181 kb on + strand, within LU632_RS09120at 1717.181 kb on + strand, within LU632_RS09120at 1717.184 kb on + strand, within LU632_RS09120at 1717.184 kb on + strand, within LU632_RS09120at 1717.184 kb on + strand, within LU632_RS09120at 1717.184 kb on + strand, within LU632_RS09120at 1717.185 kb on - strand, within LU632_RS09120at 1717.185 kb on - strand, within LU632_RS09120at 1717.185 kb on - strand, within LU632_RS09120at 1717.185 kb on - strand, within LU632_RS09120at 1717.185 kb on - strand, within LU632_RS09120at 1717.277 kb on - strand, within LU632_RS09120at 1717.277 kb on - strand, within LU632_RS09120at 1717.308 kb on + strand, within LU632_RS09120at 1717.308 kb on + strand, within LU632_RS09120at 1717.467 kb on - strand, within LU632_RS09120at 1717.510 kb on + strand, within LU632_RS09120at 1717.510 kb on + strand, within LU632_RS09120at 1717.511 kb on - strand, within LU632_RS09120at 1717.511 kb on - strand, within LU632_RS09120at 1717.511 kb on - strand, within LU632_RS09120at 1717.512 kb on + strand, within LU632_RS09120at 1717.512 kb on + strand, within LU632_RS09120at 1717.513 kb on - strand, within LU632_RS09120at 1717.726 kb on - strandat 1717.738 kb on - strandat 1717.753 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-Glucose
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1,715,782 - LU632_RS09115 0.64 -0.3
1,715,856 + LU632_RS09115 0.67 -1.3
1,715,858 - LU632_RS09115 0.67 -0.2
1,715,955 + LU632_RS09115 0.71 -0.0
1,715,956 - LU632_RS09115 0.71 +0.1
1,715,956 - LU632_RS09115 0.71 -0.4
1,715,956 - LU632_RS09115 0.71 -1.1
1,715,956 - LU632_RS09115 0.71 -0.2
1,715,956 - LU632_RS09115 0.71 -0.0
1,715,956 - LU632_RS09115 0.71 +0.8
1,716,003 + LU632_RS09115 0.73 +0.4
1,716,003 + LU632_RS09115 0.73 +0.2
1,716,004 - LU632_RS09115 0.73 +0.3
1,716,004 - LU632_RS09115 0.73 +0.5
1,716,015 + LU632_RS09115 0.73 -0.1
1,716,016 - LU632_RS09115 0.73 -0.1
1,716,078 + LU632_RS09115 0.76 +0.2
1,716,197 + LU632_RS09115 0.80 +1.1
1,716,197 + LU632_RS09115 0.80 -0.5
1,716,198 - LU632_RS09115 0.80 +0.1
1,716,309 - LU632_RS09115 0.85 -0.3
1,716,412 - LU632_RS09115 0.89 +0.1
1,716,550 + +0.8
1,716,550 + -0.1
1,716,550 + +0.5
1,716,550 + +0.3
1,716,550 + -0.1
1,716,550 + -0.9
1,716,551 - -0.1
1,716,551 - +1.4
1,716,551 - -0.8
1,716,551 - +0.2
1,716,552 + +0.5
1,716,552 + -0.1
1,716,552 + +0.4
1,716,552 + +0.5
1,716,552 + +0.1
1,716,552 + -0.0
1,716,552 + +0.5
1,716,553 - +0.4
1,716,554 + -0.7
1,716,554 + -0.3
1,716,554 + +0.1
1,716,554 + -0.8
1,716,555 - +0.5
1,716,555 - -0.4
1,716,615 - -1.5
1,716,681 + -0.0
1,716,707 + -0.5
1,716,721 - -0.4
1,716,731 + -0.2
1,716,733 + +0.0
1,716,733 + +0.3
1,716,733 + +0.2
1,716,733 + -0.2
1,716,734 + -0.3
1,716,734 - +0.3
1,716,734 - +0.9
1,716,738 + +0.3
1,716,738 + +0.2
1,716,738 + -0.1
1,716,739 - +0.1
1,716,739 - -0.0
1,716,739 - +0.2
1,716,739 - -0.0
1,716,935 - LU632_RS09120 0.21 +0.4
1,717,014 + LU632_RS09120 0.29 -0.1
1,717,021 + LU632_RS09120 0.29 -0.0
1,717,021 + LU632_RS09120 0.29 +0.5
1,717,023 + LU632_RS09120 0.30 +0.1
1,717,024 - LU632_RS09120 0.30 +0.4
1,717,024 - LU632_RS09120 0.30 +0.8
1,717,039 + LU632_RS09120 0.31 -0.1
1,717,081 + LU632_RS09120 0.35 -1.1
1,717,081 + LU632_RS09120 0.35 +0.5
1,717,081 + LU632_RS09120 0.35 +0.2
1,717,082 - LU632_RS09120 0.35 +1.5
1,717,082 - LU632_RS09120 0.35 +0.1
1,717,135 + LU632_RS09120 0.40 +0.9
1,717,135 + LU632_RS09120 0.40 -0.2
1,717,135 + LU632_RS09120 0.40 +0.2
1,717,136 - LU632_RS09120 0.40 -0.0
1,717,138 + LU632_RS09120 0.41 -0.0
1,717,138 + LU632_RS09120 0.41 +0.5
1,717,138 + LU632_RS09120 0.41 -0.2
1,717,139 - LU632_RS09120 0.41 +0.2
1,717,139 - LU632_RS09120 0.41 +0.4
1,717,143 + LU632_RS09120 0.41 +0.8
1,717,143 + LU632_RS09120 0.41 -0.9
1,717,143 + LU632_RS09120 0.41 +0.1
1,717,144 - LU632_RS09120 0.41 -0.2
1,717,144 - LU632_RS09120 0.41 +0.2
1,717,181 + LU632_RS09120 0.45 -0.2
1,717,181 + LU632_RS09120 0.45 +0.9
1,717,184 + LU632_RS09120 0.45 -0.6
1,717,184 + LU632_RS09120 0.45 +1.3
1,717,184 + LU632_RS09120 0.45 -1.5
1,717,184 + LU632_RS09120 0.45 +0.8
1,717,185 - LU632_RS09120 0.45 +0.9
1,717,185 - LU632_RS09120 0.45 +0.3
1,717,185 - LU632_RS09120 0.45 -0.1
1,717,185 - LU632_RS09120 0.45 +0.5
1,717,185 - LU632_RS09120 0.45 +0.4
1,717,277 - LU632_RS09120 0.54 +1.3
1,717,277 - LU632_RS09120 0.54 -1.0
1,717,308 + LU632_RS09120 0.57 -1.2
1,717,308 + LU632_RS09120 0.57 +0.3
1,717,467 - LU632_RS09120 0.72 +0.3
1,717,510 + LU632_RS09120 0.76 +1.1
1,717,510 + LU632_RS09120 0.76 -0.5
1,717,511 - LU632_RS09120 0.76 +0.6
1,717,511 - LU632_RS09120 0.76 -0.3
1,717,511 - LU632_RS09120 0.76 +0.2
1,717,512 + LU632_RS09120 0.76 -1.2
1,717,512 + LU632_RS09120 0.76 +0.2
1,717,513 - LU632_RS09120 0.76 -0.1
1,717,726 - +0.5
1,717,738 - +0.9
1,717,753 + -1.0

Or see this region's nucleotide sequence