Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08995

Experiment: HBM-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmodC and tnpA are separated by 66 nucleotidestnpA and LU632_RS09000 are separated by 23 nucleotides LU632_RS08990: modC - molybdenum ABC transporter ATP-binding protein ModC, at 1,694,627 to 1,695,685 modC LU632_RS08995: tnpA - IS200/IS605 family transposase, at 1,695,752 to 1,696,168 tnpA LU632_RS09000: LU632_RS09000 - transposase, at 1,696,192 to 1,697,400 _RS09000 Position (kb) 1695 1696 1697Strain fitness (log2 ratio) -2 -1 0 1at 1694.922 kb on - strand, within modCat 1695.111 kb on + strand, within modCat 1695.115 kb on + strand, within modCat 1695.116 kb on - strand, within modCat 1695.116 kb on - strand, within modCat 1695.127 kb on - strand, within modCat 1695.139 kb on - strand, within modCat 1695.176 kb on + strand, within modCat 1695.176 kb on + strand, within modCat 1695.177 kb on - strand, within modCat 1695.223 kb on - strand, within modCat 1695.223 kb on - strand, within modCat 1695.223 kb on - strand, within modCat 1695.223 kb on - strand, within modCat 1695.228 kb on + strand, within modCat 1695.362 kb on + strand, within modCat 1695.397 kb on + strand, within modCat 1695.397 kb on + strand, within modCat 1695.397 kb on + strand, within modCat 1695.398 kb on - strand, within modCat 1695.511 kb on + strand, within modCat 1695.555 kb on + strand, within modCat 1695.579 kb on + strand, within modCat 1695.602 kb on - strandat 1695.662 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-Glucose
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1,694,922 - modC LU632_RS08990 0.28 -1.1
1,695,111 + modC LU632_RS08990 0.46 -0.2
1,695,115 + modC LU632_RS08990 0.46 -1.2
1,695,116 - modC LU632_RS08990 0.46 -2.0
1,695,116 - modC LU632_RS08990 0.46 -0.0
1,695,127 - modC LU632_RS08990 0.47 -0.1
1,695,139 - modC LU632_RS08990 0.48 -0.3
1,695,176 + modC LU632_RS08990 0.52 -0.8
1,695,176 + modC LU632_RS08990 0.52 -0.1
1,695,177 - modC LU632_RS08990 0.52 -0.5
1,695,223 - modC LU632_RS08990 0.56 -0.2
1,695,223 - modC LU632_RS08990 0.56 +1.1
1,695,223 - modC LU632_RS08990 0.56 +0.1
1,695,223 - modC LU632_RS08990 0.56 -0.3
1,695,228 + modC LU632_RS08990 0.57 +0.5
1,695,362 + modC LU632_RS08990 0.69 +0.1
1,695,397 + modC LU632_RS08990 0.73 -0.3
1,695,397 + modC LU632_RS08990 0.73 +0.7
1,695,397 + modC LU632_RS08990 0.73 -0.8
1,695,398 - modC LU632_RS08990 0.73 +0.9
1,695,511 + modC LU632_RS08990 0.83 -0.5
1,695,555 + modC LU632_RS08990 0.88 +0.2
1,695,579 + modC LU632_RS08990 0.90 -0.1
1,695,602 - -0.0
1,695,662 - -0.1

Or see this region's nucleotide sequence