Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08620

Experiment: HBM-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS08610 and LU632_RS08615 are separated by 8 nucleotidesLU632_RS08615 and LU632_RS08620 are separated by 258 nucleotidesLU632_RS08620 and tnpA are separated by 166 nucleotidestnpA and LU632_RS08630 are separated by 75 nucleotides LU632_RS08610: LU632_RS08610 - Ig-like domain-containing protein, at 1,615,125 to 1,615,796 _RS08610 LU632_RS08615: LU632_RS08615 - DUF1493 family protein, at 1,615,805 to 1,616,131 _RS08615 LU632_RS08620: LU632_RS08620 - IS6 family transposase, at 1,616,390 to 1,616,705 _RS08620 LU632_RS08625: tnpA - IS200/IS605 family transposase, at 1,616,872 to 1,617,258 tnpA LU632_RS08630: LU632_RS08630 - transposase, at 1,617,334 to 1,617,729 _RS08630 Position (kb) 1616 1617Strain fitness (log2 ratio) -1 0 1at 1615.397 kb on + strand, within LU632_RS08610at 1615.398 kb on - strand, within LU632_RS08610at 1615.398 kb on - strand, within LU632_RS08610at 1615.399 kb on - strand, within LU632_RS08610at 1615.402 kb on + strand, within LU632_RS08610at 1615.403 kb on - strand, within LU632_RS08610at 1615.462 kb on + strand, within LU632_RS08610at 1615.604 kb on + strand, within LU632_RS08610at 1615.604 kb on + strand, within LU632_RS08610at 1615.604 kb on + strand, within LU632_RS08610at 1615.605 kb on - strand, within LU632_RS08610at 1615.605 kb on - strand, within LU632_RS08610at 1615.631 kb on + strand, within LU632_RS08610at 1615.631 kb on + strand, within LU632_RS08610at 1615.632 kb on - strand, within LU632_RS08610at 1615.763 kb on + strandat 1615.763 kb on + strandat 1615.795 kb on - strandat 1615.800 kb on + strandat 1615.802 kb on + strandat 1615.807 kb on - strandat 1615.895 kb on - strand, within LU632_RS08615at 1615.895 kb on - strand, within LU632_RS08615at 1615.916 kb on + strand, within LU632_RS08615at 1615.922 kb on + strand, within LU632_RS08615at 1615.998 kb on + strand, within LU632_RS08615at 1616.022 kb on + strand, within LU632_RS08615at 1616.043 kb on - strand, within LU632_RS08615at 1616.088 kb on - strand, within LU632_RS08615at 1616.088 kb on - strand, within LU632_RS08615at 1616.088 kb on - strand, within LU632_RS08615at 1616.132 kb on - strandat 1616.132 kb on - strandat 1616.178 kb on + strandat 1616.179 kb on - strandat 1616.213 kb on - strandat 1616.233 kb on - strandat 1616.250 kb on + strandat 1616.255 kb on - strandat 1616.359 kb on + strandat 1616.359 kb on + strandat 1616.359 kb on + strandat 1616.388 kb on - strandat 1616.388 kb on - strandat 1616.388 kb on - strandat 1616.388 kb on - strandat 1616.461 kb on - strand, within LU632_RS08620at 1616.461 kb on - strand, within LU632_RS08620at 1616.475 kb on - strand, within LU632_RS08620at 1616.631 kb on + strand, within LU632_RS08620at 1616.631 kb on + strand, within LU632_RS08620at 1617.337 kb on + strandat 1617.360 kb on + strandat 1617.370 kb on + strandat 1617.452 kb on - strand, within LU632_RS08630at 1617.648 kb on - strand, within LU632_RS08630at 1617.674 kb on - strand, within LU632_RS08630at 1617.674 kb on - strand, within LU632_RS08630at 1617.677 kb on - strand, within LU632_RS08630

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-Glucose
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1,615,397 + LU632_RS08610 0.40 +1.1
1,615,398 - LU632_RS08610 0.41 -1.0
1,615,398 - LU632_RS08610 0.41 -0.1
1,615,399 - LU632_RS08610 0.41 +0.2
1,615,402 + LU632_RS08610 0.41 -0.2
1,615,403 - LU632_RS08610 0.41 -0.3
1,615,462 + LU632_RS08610 0.50 -0.4
1,615,604 + LU632_RS08610 0.71 +0.2
1,615,604 + LU632_RS08610 0.71 +0.4
1,615,604 + LU632_RS08610 0.71 -1.2
1,615,605 - LU632_RS08610 0.71 +1.5
1,615,605 - LU632_RS08610 0.71 +0.1
1,615,631 + LU632_RS08610 0.75 -0.0
1,615,631 + LU632_RS08610 0.75 -0.5
1,615,632 - LU632_RS08610 0.75 -0.4
1,615,763 + +0.1
1,615,763 + -0.3
1,615,795 - +0.4
1,615,800 + -0.4
1,615,802 + -0.2
1,615,807 - -0.2
1,615,895 - LU632_RS08615 0.28 -1.3
1,615,895 - LU632_RS08615 0.28 +0.5
1,615,916 + LU632_RS08615 0.34 -0.1
1,615,922 + LU632_RS08615 0.36 -0.5
1,615,998 + LU632_RS08615 0.59 -0.7
1,616,022 + LU632_RS08615 0.66 -0.1
1,616,043 - LU632_RS08615 0.73 -0.4
1,616,088 - LU632_RS08615 0.87 -0.6
1,616,088 - LU632_RS08615 0.87 -0.3
1,616,088 - LU632_RS08615 0.87 -0.3
1,616,132 - -0.0
1,616,132 - +0.3
1,616,178 + -0.2
1,616,179 - +0.1
1,616,213 - +0.0
1,616,233 - +0.3
1,616,250 + +0.9
1,616,255 - -0.8
1,616,359 + -0.0
1,616,359 + -1.3
1,616,359 + +0.2
1,616,388 - +0.2
1,616,388 - -0.0
1,616,388 - +0.0
1,616,388 - +0.2
1,616,461 - LU632_RS08620 0.22 +0.3
1,616,461 - LU632_RS08620 0.22 +0.7
1,616,475 - LU632_RS08620 0.27 +0.1
1,616,631 + LU632_RS08620 0.76 -0.5
1,616,631 + LU632_RS08620 0.76 +0.3
1,617,337 + +1.1
1,617,360 + -0.0
1,617,370 + -0.2
1,617,452 - LU632_RS08630 0.30 +0.3
1,617,648 - LU632_RS08630 0.79 +0.7
1,617,674 - LU632_RS08630 0.86 -0.9
1,617,674 - LU632_RS08630 0.86 +0.5
1,617,677 - LU632_RS08630 0.87 -0.4

Or see this region's nucleotide sequence