Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07255

Experiment: HBM-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS07245 and LU632_RS07250 are separated by 76 nucleotidesLU632_RS07250 and LU632_RS07255 are separated by 147 nucleotidesLU632_RS07255 and LU632_RS07260 are separated by 261 nucleotidesLU632_RS07260 and LU632_RS07265 are separated by 134 nucleotides LU632_RS07245: LU632_RS07245 - glycosyltransferase family 2 protein, at 1,370,768 to 1,371,248 _RS07245 LU632_RS07250: LU632_RS07250 - transposase, at 1,371,325 to 1,371,716 _RS07250 LU632_RS07255: LU632_RS07255 - hypothetical protein, at 1,371,864 to 1,372,175 _RS07255 LU632_RS07260: LU632_RS07260 - hypothetical protein, at 1,372,437 to 1,372,613 _RS07260 LU632_RS07265: LU632_RS07265 - IS91 family transposase, at 1,372,748 to 1,373,971 _RS07265 Position (kb) 1371 1372 1373Strain fitness (log2 ratio) -2 -1 0 1at 1370.876 kb on + strand, within LU632_RS07245at 1370.900 kb on + strand, within LU632_RS07245at 1370.913 kb on - strand, within LU632_RS07245at 1370.936 kb on + strand, within LU632_RS07245at 1370.936 kb on + strand, within LU632_RS07245at 1370.936 kb on + strand, within LU632_RS07245at 1371.079 kb on + strand, within LU632_RS07245at 1371.080 kb on - strand, within LU632_RS07245at 1371.080 kb on - strand, within LU632_RS07245at 1371.083 kb on + strand, within LU632_RS07245at 1371.175 kb on - strand, within LU632_RS07245at 1371.175 kb on - strand, within LU632_RS07245at 1371.185 kb on + strand, within LU632_RS07245at 1371.186 kb on - strand, within LU632_RS07245at 1371.186 kb on - strand, within LU632_RS07245at 1371.264 kb on + strandat 1371.265 kb on - strandat 1371.809 kb on + strandat 1371.810 kb on - strandat 1371.833 kb on + strandat 1371.833 kb on + strandat 1371.833 kb on + strandat 1371.833 kb on + strandat 1371.834 kb on - strandat 1371.834 kb on - strandat 1371.834 kb on - strandat 1371.834 kb on - strandat 1371.924 kb on - strand, within LU632_RS07255at 1371.959 kb on + strand, within LU632_RS07255at 1372.002 kb on - strand, within LU632_RS07255at 1372.002 kb on - strand, within LU632_RS07255at 1372.117 kb on + strand, within LU632_RS07255at 1372.146 kb on + strandat 1372.146 kb on + strandat 1372.146 kb on + strandat 1372.147 kb on - strandat 1372.150 kb on + strandat 1372.150 kb on + strandat 1372.150 kb on + strandat 1372.151 kb on - strandat 1372.151 kb on - strandat 1372.151 kb on - strandat 1372.151 kb on - strandat 1372.151 kb on - strandat 1372.151 kb on - strandat 1372.151 kb on - strandat 1372.151 kb on - strandat 1372.151 kb on - strandat 1372.168 kb on + strandat 1372.169 kb on - strandat 1372.169 kb on - strandat 1372.194 kb on + strandat 1372.229 kb on + strandat 1372.310 kb on - strandat 1372.355 kb on + strandat 1372.415 kb on + strandat 1372.415 kb on + strandat 1372.415 kb on + strandat 1372.418 kb on + strandat 1372.418 kb on + strandat 1372.426 kb on - strandat 1372.437 kb on - strandat 1372.485 kb on + strand, within LU632_RS07260at 1372.485 kb on + strand, within LU632_RS07260at 1372.486 kb on - strand, within LU632_RS07260at 1372.488 kb on - strand, within LU632_RS07260at 1372.488 kb on - strand, within LU632_RS07260

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-Glucose
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1,370,876 + LU632_RS07245 0.22 -0.7
1,370,900 + LU632_RS07245 0.27 +0.1
1,370,913 - LU632_RS07245 0.30 +1.3
1,370,936 + LU632_RS07245 0.35 -0.7
1,370,936 + LU632_RS07245 0.35 -0.2
1,370,936 + LU632_RS07245 0.35 -0.5
1,371,079 + LU632_RS07245 0.65 +0.6
1,371,080 - LU632_RS07245 0.65 +0.8
1,371,080 - LU632_RS07245 0.65 +0.2
1,371,083 + LU632_RS07245 0.65 +0.6
1,371,175 - LU632_RS07245 0.85 +0.8
1,371,175 - LU632_RS07245 0.85 +0.1
1,371,185 + LU632_RS07245 0.87 -0.2
1,371,186 - LU632_RS07245 0.87 -0.7
1,371,186 - LU632_RS07245 0.87 -0.4
1,371,264 + -0.2
1,371,265 - -1.6
1,371,809 + +0.1
1,371,810 - +0.6
1,371,833 + +0.1
1,371,833 + -0.0
1,371,833 + -1.6
1,371,833 + +0.1
1,371,834 - +0.3
1,371,834 - -0.3
1,371,834 - -0.1
1,371,834 - +0.4
1,371,924 - LU632_RS07255 0.19 -0.7
1,371,959 + LU632_RS07255 0.30 -0.3
1,372,002 - LU632_RS07255 0.44 -0.3
1,372,002 - LU632_RS07255 0.44 +0.1
1,372,117 + LU632_RS07255 0.81 -0.2
1,372,146 + +0.5
1,372,146 + +0.8
1,372,146 + +0.0
1,372,147 - +0.4
1,372,150 + +0.6
1,372,150 + +1.4
1,372,150 + -0.3
1,372,151 - +0.6
1,372,151 - +0.5
1,372,151 - -0.5
1,372,151 - -0.4
1,372,151 - +0.4
1,372,151 - -2.0
1,372,151 - -0.4
1,372,151 - -0.4
1,372,151 - +0.2
1,372,168 + +0.4
1,372,169 - -1.7
1,372,169 - -0.1
1,372,194 + +1.5
1,372,229 + -0.7
1,372,310 - -0.4
1,372,355 + +0.8
1,372,415 + -0.8
1,372,415 + -0.4
1,372,415 + +0.9
1,372,418 + +0.0
1,372,418 + +0.2
1,372,426 - -0.7
1,372,437 - -0.4
1,372,485 + LU632_RS07260 0.27 -0.5
1,372,485 + LU632_RS07260 0.27 +0.6
1,372,486 - LU632_RS07260 0.28 +0.2
1,372,488 - LU632_RS07260 0.29 -0.1
1,372,488 - LU632_RS07260 0.29 +0.6

Or see this region's nucleotide sequence