Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS05060 and LU632_RS05065 are separated by 0 nucleotides LU632_RS05065 and LU632_RS05070 are separated by 56 nucleotides LU632_RS05070 and LU632_RS05075 are separated by 325 nucleotides LU632_RS05075 and LU632_RS05080 overlap by 23 nucleotides
LU632_RS05060: LU632_RS05060 - integrase domain-containing protein, at 986,288 to 987,345
_RS05060
LU632_RS05065: LU632_RS05065 - helix-turn-helix domain-containing protein, at 987,346 to 987,633
_RS05065
LU632_RS05070: LU632_RS05070 - IS481 family transposase, at 987,690 to 988,730
_RS05070
LU632_RS05075: LU632_RS05075 - hypothetical protein, at 989,056 to 989,271
_RS05075
LU632_RS05080: LU632_RS05080 - IS91 family transposase, at 989,249 to 990,280
_RS05080
Position (kb) 987
988
989 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 986.703 kb on - strand, within LU632_RS05060 at 986.796 kb on + strand, within LU632_RS05060 at 986.796 kb on + strand, within LU632_RS05060 at 986.806 kb on - strand, within LU632_RS05060 at 986.823 kb on + strand, within LU632_RS05060 at 986.965 kb on - strand, within LU632_RS05060 at 986.965 kb on - strand, within LU632_RS05060 at 987.073 kb on + strand, within LU632_RS05060 at 987.074 kb on - strand, within LU632_RS05060 at 987.128 kb on + strand, within LU632_RS05060 at 987.129 kb on - strand, within LU632_RS05060 at 987.144 kb on + strand, within LU632_RS05060 at 987.145 kb on - strand, within LU632_RS05060 at 987.149 kb on + strand, within LU632_RS05060 at 987.150 kb on - strand, within LU632_RS05060 at 987.192 kb on - strand, within LU632_RS05060 at 987.197 kb on - strand, within LU632_RS05060 at 987.202 kb on + strand, within LU632_RS05060 at 987.203 kb on - strand, within LU632_RS05060 at 987.203 kb on - strand, within LU632_RS05060 at 987.228 kb on + strand, within LU632_RS05060 at 987.229 kb on - strand, within LU632_RS05060 at 987.344 kb on - strand at 987.351 kb on - strand at 987.356 kb on + strand at 987.375 kb on - strand, within LU632_RS05065 at 987.375 kb on - strand, within LU632_RS05065 at 987.638 kb on - strand at 988.859 kb on + strand at 988.920 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 986,703 - LU632_RS05060 0.39 -0.2 986,796 + LU632_RS05060 0.48 -3.1 986,796 + LU632_RS05060 0.48 -0.0 986,806 - LU632_RS05060 0.49 +0.0 986,823 + LU632_RS05060 0.51 -0.2 986,965 - LU632_RS05060 0.64 +0.8 986,965 - LU632_RS05060 0.64 +1.0 987,073 + LU632_RS05060 0.74 -0.6 987,074 - LU632_RS05060 0.74 -0.1 987,128 + LU632_RS05060 0.79 +0.2 987,129 - LU632_RS05060 0.79 +0.1 987,144 + LU632_RS05060 0.81 +0.1 987,145 - LU632_RS05060 0.81 +0.2 987,149 + LU632_RS05060 0.81 +1.3 987,150 - LU632_RS05060 0.81 +1.2 987,192 - LU632_RS05060 0.85 +0.9 987,197 - LU632_RS05060 0.86 +0.2 987,202 + LU632_RS05060 0.86 -1.5 987,203 - LU632_RS05060 0.86 +1.4 987,203 - LU632_RS05060 0.86 +0.4 987,228 + LU632_RS05060 0.89 -1.0 987,229 - LU632_RS05060 0.89 +1.0 987,344 - -0.7 987,351 - +0.7 987,356 + +0.2 987,375 - LU632_RS05065 0.10 -0.8 987,375 - LU632_RS05065 0.10 +0.7 987,638 - -1.3 988,859 + -0.1 988,920 - -0.2
Or see this region's nucleotide sequence