Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04525 and LU632_RS04530 overlap by 11 nucleotides LU632_RS04530 and LU632_RS04535 are separated by 343 nucleotides LU632_RS04535 and LU632_RS04540 are separated by 98 nucleotides LU632_RS04540 and LU632_RS04545 are separated by 238 nucleotides
LU632_RS04525: LU632_RS04525 - type II toxin-antitoxin system RelB/DinJ family antitoxin, at 888,318 to 888,572
_RS04525
LU632_RS04530: LU632_RS04530 - type II toxin-antitoxin system RelE/ParE family toxin, at 888,562 to 888,852
_RS04530
LU632_RS04535: LU632_RS04535 - IS91 family transposase, at 889,196 to 890,419
_RS04535
LU632_RS04540: LU632_RS04540 - recombinase family protein, at 890,518 to 890,937
_RS04540
LU632_RS04545: LU632_RS04545 - hypothetical protein, at 891,176 to 892,093
_RS04545
Position (kb) 889
890
891 Strain fitness (log2 ratio) -1
0
1 at 888.609 kb on + strand, within LU632_RS04530 at 888.609 kb on + strand, within LU632_RS04530 at 888.609 kb on + strand, within LU632_RS04530 at 888.782 kb on + strand, within LU632_RS04530 at 888.783 kb on - strand, within LU632_RS04530 at 888.851 kb on - strand at 888.915 kb on - strand at 888.954 kb on + strand at 890.500 kb on + strand at 890.500 kb on + strand at 890.500 kb on + strand at 890.546 kb on + strand at 890.546 kb on + strand at 890.568 kb on - strand, within LU632_RS04540 at 890.634 kb on + strand, within LU632_RS04540 at 890.634 kb on + strand, within LU632_RS04540 at 890.635 kb on - strand, within LU632_RS04540 at 890.657 kb on + strand, within LU632_RS04540 at 890.669 kb on + strand, within LU632_RS04540 at 890.669 kb on + strand, within LU632_RS04540 at 890.682 kb on - strand, within LU632_RS04540 at 890.779 kb on - strand, within LU632_RS04540 at 890.880 kb on + strand, within LU632_RS04540 at 890.881 kb on - strand, within LU632_RS04540 at 891.019 kb on + strand at 891.019 kb on + strand at 891.023 kb on + strand at 891.060 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 888,609 + LU632_RS04530 0.16 -0.4 888,609 + LU632_RS04530 0.16 +0.8 888,609 + LU632_RS04530 0.16 -0.0 888,782 + LU632_RS04530 0.76 -0.3 888,783 - LU632_RS04530 0.76 +0.4 888,851 - +0.8 888,915 - -0.3 888,954 + +1.1 890,500 + -1.5 890,500 + +0.6 890,500 + +0.2 890,546 + +0.5 890,546 + -0.3 890,568 - LU632_RS04540 0.12 -0.3 890,634 + LU632_RS04540 0.28 -0.0 890,634 + LU632_RS04540 0.28 -0.6 890,635 - LU632_RS04540 0.28 +0.4 890,657 + LU632_RS04540 0.33 +0.3 890,669 + LU632_RS04540 0.36 -0.5 890,669 + LU632_RS04540 0.36 -0.4 890,682 - LU632_RS04540 0.39 +0.5 890,779 - LU632_RS04540 0.62 -0.2 890,880 + LU632_RS04540 0.86 +0.0 890,881 - LU632_RS04540 0.86 +0.2 891,019 + -0.2 891,019 + +0.9 891,023 + -0.3 891,060 + +0.5
Or see this region's nucleotide sequence