Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04505 and LU632_RS04510 are separated by 147 nucleotides LU632_RS04510 and LU632_RS04515 are separated by 81 nucleotides LU632_RS04515 and LU632_RS04520 are separated by 109 nucleotides
LU632_RS04505: LU632_RS04505 - H-NS histone family protein, at 885,133 to 885,585
_RS04505
LU632_RS04510: LU632_RS04510 - IS91 family transposase, at 885,733 to 886,956
_RS04510
LU632_RS04515: LU632_RS04515 - DUF4158 domain-containing protein, at 887,038 to 887,541
_RS04515
LU632_RS04520: LU632_RS04520 - hypothetical protein, at 887,651 to 887,941
_RS04520
Position (kb) 885
886
887 Strain fitness (log2 ratio) -1
0
1
2 at 884.739 kb on + strand at 884.739 kb on + strand at 884.751 kb on + strand at 884.766 kb on + strand at 884.766 kb on + strand at 884.766 kb on + strand at 884.767 kb on - strand at 884.837 kb on + strand at 884.838 kb on - strand at 884.846 kb on + strand at 884.846 kb on + strand at 884.846 kb on + strand at 884.846 kb on + strand at 884.846 kb on + strand at 884.846 kb on + strand at 884.847 kb on - strand at 884.847 kb on - strand at 884.847 kb on - strand at 884.847 kb on - strand at 884.847 kb on - strand at 884.847 kb on - strand at 884.851 kb on - strand at 884.927 kb on - strand at 884.927 kb on - strand at 884.928 kb on + strand at 884.951 kb on - strand at 884.980 kb on - strand at 884.980 kb on - strand at 885.014 kb on + strand at 885.015 kb on - strand at 885.015 kb on - strand at 885.015 kb on - strand at 885.017 kb on + strand at 885.126 kb on + strand at 885.126 kb on + strand at 885.126 kb on + strand at 885.131 kb on + strand at 885.132 kb on - strand at 885.253 kb on - strand, within LU632_RS04505 at 885.279 kb on - strand, within LU632_RS04505 at 885.304 kb on - strand, within LU632_RS04505 at 885.310 kb on - strand, within LU632_RS04505 at 885.310 kb on - strand, within LU632_RS04505 at 885.586 kb on - strand at 887.037 kb on + strand at 887.627 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 884,739 + +0.7 884,739 + +0.7 884,751 + -0.5 884,766 + -0.7 884,766 + -0.4 884,766 + -0.9 884,767 - +0.3 884,837 + +0.4 884,838 - -0.1 884,846 + -1.6 884,846 + -0.1 884,846 + +0.6 884,846 + +0.2 884,846 + -0.6 884,846 + +0.3 884,847 - -0.6 884,847 - +0.8 884,847 - +0.1 884,847 - -0.3 884,847 - +1.2 884,847 - +0.9 884,851 - +0.2 884,927 - -0.1 884,927 - -0.2 884,928 + -0.3 884,951 - -0.9 884,980 - -0.7 884,980 - +0.4 885,014 + +1.9 885,015 - -0.5 885,015 - -0.5 885,015 - +1.3 885,017 + -0.2 885,126 + -1.6 885,126 + +0.1 885,126 + -0.3 885,131 + -1.0 885,132 - +0.2 885,253 - LU632_RS04505 0.26 -0.2 885,279 - LU632_RS04505 0.32 -0.6 885,304 - LU632_RS04505 0.38 -1.3 885,310 - LU632_RS04505 0.39 -0.2 885,310 - LU632_RS04505 0.39 -0.3 885,586 - -0.3 887,037 + +0.7 887,627 + -0.5
Or see this region's nucleotide sequence