Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04400 and LU632_RS04405 are separated by 150 nucleotides LU632_RS04405 and LU632_RS04410 are separated by 44 nucleotides LU632_RS04410 and LU632_RS04415 are separated by 30 nucleotides
LU632_RS04400: LU632_RS04400 - recombinase family protein, at 868,763 to 869,344
_RS04400
LU632_RS04405: LU632_RS04405 - DUF4158 domain-containing protein, at 869,495 to 869,767
_RS04405
LU632_RS04410: LU632_RS04410 - Tn3 family transposase, at 869,812 to 872,322
_RS04410
LU632_RS04415: LU632_RS04415 - IS91 family transposase, at 872,353 to 873,576
_RS04415
Position (kb) 869
870
871
872
873 Strain fitness (log2 ratio) -1
0
1
2 at 868.973 kb on - strand, within LU632_RS04400 at 868.973 kb on - strand, within LU632_RS04400 at 869.006 kb on + strand, within LU632_RS04400 at 869.007 kb on - strand, within LU632_RS04400 at 869.007 kb on - strand, within LU632_RS04400 at 869.046 kb on + strand, within LU632_RS04400 at 869.046 kb on + strand, within LU632_RS04400 at 869.159 kb on - strand, within LU632_RS04400 at 869.345 kb on - strand at 869.439 kb on + strand at 869.476 kb on + strand at 869.515 kb on + strand at 870.017 kb on - strand at 870.017 kb on - strand at 870.059 kb on - strand at 870.976 kb on - strand, within LU632_RS04410 at 871.030 kb on - strand, within LU632_RS04410 at 871.681 kb on - strand, within LU632_RS04410 at 871.910 kb on - strand, within LU632_RS04410
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 868,973 - LU632_RS04400 0.36 +0.6 868,973 - LU632_RS04400 0.36 +1.0 869,006 + LU632_RS04400 0.42 -0.3 869,007 - LU632_RS04400 0.42 +0.0 869,007 - LU632_RS04400 0.42 +0.1 869,046 + LU632_RS04400 0.49 -0.5 869,046 + LU632_RS04400 0.49 +0.8 869,159 - LU632_RS04400 0.68 +2.3 869,345 - -1.7 869,439 + +0.2 869,476 + -0.3 869,515 + -0.3 870,017 - -0.2 870,017 - -0.5 870,059 - -0.4 870,976 - LU632_RS04410 0.46 +0.4 871,030 - LU632_RS04410 0.49 -0.1 871,681 - LU632_RS04410 0.74 -0.3 871,910 - LU632_RS04410 0.84 +0.2
Or see this region's nucleotide sequence