Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04105

Experiment: HBM-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS04090 and LU632_RS04095 are separated by 37 nucleotidesLU632_RS04095 and LU632_RS04100 overlap by 82 nucleotidesLU632_RS04100 and LU632_RS04105 are separated by 127 nucleotidesLU632_RS04105 and LU632_RS04110 are separated by 123 nucleotidesLU632_RS04110 and LU632_RS04115 are separated by 37 nucleotides LU632_RS04090: LU632_RS04090 - IS3 family transposase, at 815,090 to 815,859 _RS04090 LU632_RS04095: LU632_RS04095 - IS1 family transposase, at 815,897 to 816,400 _RS04095 LU632_RS04100: LU632_RS04100 - IS1-like element transposase, at 816,319 to 816,594 _RS04100 LU632_RS04105: LU632_RS04105 - hypothetical protein, at 816,722 to 817,663 _RS04105 LU632_RS04110: LU632_RS04110 - DUF945 domain-containing protein, at 817,787 to 818,608 _RS04110 LU632_RS04115: LU632_RS04115 - antirestriction protein, at 818,646 to 819,125 _RS04115 Position (kb) 816 817 818Strain fitness (log2 ratio) -2 -1 0 1at 815.755 kb on - strand, within LU632_RS04090at 815.828 kb on + strandat 815.828 kb on + strandat 815.829 kb on - strandat 815.829 kb on - strandat 815.829 kb on - strandat 815.829 kb on - strandat 816.619 kb on + strandat 816.651 kb on + strandat 816.652 kb on - strandat 816.654 kb on + strandat 816.654 kb on + strandat 816.655 kb on - strandat 816.655 kb on - strandat 816.655 kb on - strandat 816.756 kb on + strandat 816.779 kb on - strandat 816.856 kb on + strand, within LU632_RS04105at 816.857 kb on - strand, within LU632_RS04105at 816.900 kb on - strand, within LU632_RS04105at 817.082 kb on + strand, within LU632_RS04105at 817.098 kb on - strand, within LU632_RS04105at 817.098 kb on - strand, within LU632_RS04105at 817.098 kb on - strand, within LU632_RS04105at 817.133 kb on + strand, within LU632_RS04105at 817.203 kb on + strand, within LU632_RS04105at 817.203 kb on + strand, within LU632_RS04105at 817.203 kb on + strand, within LU632_RS04105at 817.203 kb on + strand, within LU632_RS04105at 817.203 kb on + strand, within LU632_RS04105at 817.204 kb on - strand, within LU632_RS04105at 817.204 kb on - strand, within LU632_RS04105at 817.373 kb on + strand, within LU632_RS04105at 817.373 kb on + strand, within LU632_RS04105at 817.374 kb on - strand, within LU632_RS04105at 817.374 kb on - strand, within LU632_RS04105at 817.393 kb on + strand, within LU632_RS04105at 817.405 kb on + strand, within LU632_RS04105at 817.405 kb on + strand, within LU632_RS04105at 817.406 kb on - strand, within LU632_RS04105at 817.406 kb on - strand, within LU632_RS04105at 817.406 kb on - strand, within LU632_RS04105at 817.463 kb on + strand, within LU632_RS04105at 817.527 kb on - strand, within LU632_RS04105at 817.553 kb on - strand, within LU632_RS04105at 817.553 kb on - strand, within LU632_RS04105at 817.564 kb on - strand, within LU632_RS04105at 817.634 kb on - strandat 817.639 kb on - strandat 817.712 kb on + strandat 817.712 kb on + strandat 817.718 kb on + strandat 817.782 kb on + strandat 817.783 kb on - strandat 817.783 kb on - strandat 817.936 kb on + strand, within LU632_RS04110at 817.936 kb on + strand, within LU632_RS04110at 818.127 kb on + strand, within LU632_RS04110at 818.128 kb on - strand, within LU632_RS04110at 818.243 kb on + strand, within LU632_RS04110at 818.244 kb on - strand, within LU632_RS04110at 818.308 kb on - strand, within LU632_RS04110at 818.506 kb on + strand, within LU632_RS04110at 818.535 kb on + strandat 818.535 kb on + strandat 818.536 kb on - strandat 818.536 kb on - strandat 818.536 kb on - strandat 818.536 kb on - strandat 818.585 kb on - strandat 818.585 kb on - strandat 818.602 kb on + strandat 818.625 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-Glucose
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815,755 - LU632_RS04090 0.86 -0.0
815,828 + +0.2
815,828 + +0.0
815,829 - +1.3
815,829 - -0.9
815,829 - -0.7
815,829 - +0.3
816,619 + -0.7
816,651 + -0.3
816,652 - +0.6
816,654 + -0.1
816,654 + -0.4
816,655 - -0.2
816,655 - +0.1
816,655 - -0.5
816,756 + +0.1
816,779 - +1.0
816,856 + LU632_RS04105 0.14 -0.5
816,857 - LU632_RS04105 0.14 -0.5
816,900 - LU632_RS04105 0.19 -0.2
817,082 + LU632_RS04105 0.38 +0.0
817,098 - LU632_RS04105 0.40 -0.6
817,098 - LU632_RS04105 0.40 +1.3
817,098 - LU632_RS04105 0.40 +1.4
817,133 + LU632_RS04105 0.44 +1.0
817,203 + LU632_RS04105 0.51 +0.4
817,203 + LU632_RS04105 0.51 +1.7
817,203 + LU632_RS04105 0.51 -0.5
817,203 + LU632_RS04105 0.51 -0.3
817,203 + LU632_RS04105 0.51 -0.0
817,204 - LU632_RS04105 0.51 +0.8
817,204 - LU632_RS04105 0.51 -0.0
817,373 + LU632_RS04105 0.69 -1.3
817,373 + LU632_RS04105 0.69 +0.3
817,374 - LU632_RS04105 0.69 +0.5
817,374 - LU632_RS04105 0.69 -0.3
817,393 + LU632_RS04105 0.71 +0.0
817,405 + LU632_RS04105 0.73 +0.0
817,405 + LU632_RS04105 0.73 -1.9
817,406 - LU632_RS04105 0.73 -0.6
817,406 - LU632_RS04105 0.73 -0.3
817,406 - LU632_RS04105 0.73 +0.1
817,463 + LU632_RS04105 0.79 +0.3
817,527 - LU632_RS04105 0.85 -0.0
817,553 - LU632_RS04105 0.88 +0.7
817,553 - LU632_RS04105 0.88 -0.0
817,564 - LU632_RS04105 0.89 -0.5
817,634 - -0.0
817,639 - +0.4
817,712 + +0.7
817,712 + -0.2
817,718 + +0.6
817,782 + +0.7
817,783 - +0.5
817,783 - -0.5
817,936 + LU632_RS04110 0.18 -0.3
817,936 + LU632_RS04110 0.18 -0.1
818,127 + LU632_RS04110 0.41 -0.8
818,128 - LU632_RS04110 0.41 -1.4
818,243 + LU632_RS04110 0.55 +0.3
818,244 - LU632_RS04110 0.56 -0.3
818,308 - LU632_RS04110 0.63 -0.6
818,506 + LU632_RS04110 0.87 -0.4
818,535 + -0.2
818,535 + +0.3
818,536 - +1.5
818,536 - -1.9
818,536 - +0.9
818,536 - -0.4
818,585 - +0.7
818,585 - +0.7
818,602 + -0.5
818,625 - -0.9

Or see this region's nucleotide sequence