Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03820 and LU632_RS03825 are separated by 7 nucleotides LU632_RS03825 and LU632_RS03830 overlap by 82 nucleotides LU632_RS03830 and LU632_RS03835 are separated by 150 nucleotides LU632_RS03835 and tagH are separated by 256 nucleotides
LU632_RS03820: LU632_RS03820 - peptidoglycan-binding protein, at 762,605 to 763,321
_RS03820
LU632_RS03825: LU632_RS03825 - IS1 family transposase, at 763,329 to 763,832
_RS03825
LU632_RS03830: LU632_RS03830 - transposase, at 763,751 to 764,026
_RS03830
LU632_RS03835: LU632_RS03835 - hypothetical protein, at 764,177 to 764,452
_RS03835
LU632_RS03840: tagH - type VI secretion system-associated FHA domain protein TagH, at 764,709 to 766,553
tagH
Position (kb) 764
765 Strain fitness (log2 ratio) -2
-1
0
1 at 763.206 kb on + strand, within LU632_RS03820 at 763.208 kb on + strand, within LU632_RS03820 at 763.208 kb on + strand, within LU632_RS03820 at 763.209 kb on - strand, within LU632_RS03820 at 763.217 kb on + strand, within LU632_RS03820 at 763.218 kb on - strand, within LU632_RS03820 at 763.242 kb on - strand, within LU632_RS03820 at 764.051 kb on + strand at 764.051 kb on + strand at 764.097 kb on - strand at 764.106 kb on - strand at 764.106 kb on - strand at 764.141 kb on + strand at 764.144 kb on - strand at 764.176 kb on - strand at 764.176 kb on - strand at 764.186 kb on - strand at 764.230 kb on + strand, within LU632_RS03835 at 764.230 kb on + strand, within LU632_RS03835 at 764.284 kb on + strand, within LU632_RS03835 at 764.289 kb on - strand, within LU632_RS03835 at 764.340 kb on + strand, within LU632_RS03835 at 764.341 kb on - strand, within LU632_RS03835 at 764.341 kb on - strand, within LU632_RS03835 at 764.345 kb on - strand, within LU632_RS03835 at 764.372 kb on - strand, within LU632_RS03835 at 764.372 kb on - strand, within LU632_RS03835 at 764.372 kb on - strand, within LU632_RS03835 at 764.445 kb on + strand at 764.445 kb on + strand at 764.450 kb on + strand at 764.454 kb on + strand at 764.454 kb on + strand at 764.517 kb on + strand at 764.517 kb on + strand at 764.518 kb on - strand at 764.520 kb on + strand at 764.551 kb on - strand at 764.718 kb on - strand at 764.810 kb on + strand at 764.810 kb on + strand at 764.810 kb on + strand at 764.837 kb on + strand at 764.921 kb on - strand, within tagH at 764.921 kb on - strand, within tagH at 764.933 kb on + strand, within tagH at 764.933 kb on + strand, within tagH at 764.934 kb on - strand, within tagH
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 763,206 + LU632_RS03820 0.84 +0.2 763,208 + LU632_RS03820 0.84 -0.7 763,208 + LU632_RS03820 0.84 -0.4 763,209 - LU632_RS03820 0.84 +0.2 763,217 + LU632_RS03820 0.85 +0.1 763,218 - LU632_RS03820 0.85 -0.2 763,242 - LU632_RS03820 0.89 +0.7 764,051 + +1.4 764,051 + +0.0 764,097 - +1.6 764,106 - -0.2 764,106 - -0.4 764,141 + -0.5 764,144 - -0.0 764,176 - -0.6 764,176 - -1.3 764,186 - -0.4 764,230 + LU632_RS03835 0.19 +0.0 764,230 + LU632_RS03835 0.19 -0.2 764,284 + LU632_RS03835 0.39 -0.5 764,289 - LU632_RS03835 0.41 -0.3 764,340 + LU632_RS03835 0.59 +0.1 764,341 - LU632_RS03835 0.59 +0.3 764,341 - LU632_RS03835 0.59 -0.5 764,345 - LU632_RS03835 0.61 -0.5 764,372 - LU632_RS03835 0.71 +0.4 764,372 - LU632_RS03835 0.71 -1.0 764,372 - LU632_RS03835 0.71 -0.7 764,445 + -0.6 764,445 + +0.1 764,450 + +0.4 764,454 + +0.2 764,454 + +1.1 764,517 + -0.7 764,517 + +0.1 764,518 - +1.1 764,520 + +0.2 764,551 - -1.0 764,718 - -0.3 764,810 + -0.4 764,810 + -1.0 764,810 + -0.0 764,837 + +0.2 764,921 - tagH LU632_RS03840 0.11 -2.3 764,921 - tagH LU632_RS03840 0.11 +0.3 764,933 + tagH LU632_RS03840 0.12 -0.7 764,933 + tagH LU632_RS03840 0.12 -0.4 764,934 - tagH LU632_RS03840 0.12 +0.2
Or see this region's nucleotide sequence