Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03335

Experiment: HBM-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS03330 and LU632_RS03335 are separated by 467 nucleotidesLU632_RS03335 and LU632_RS03340 are separated by 1 nucleotides LU632_RS03330: LU632_RS03330 - LacI family DNA-binding transcriptional regulator, at 682,053 to 683,060 _RS03330 LU632_RS03335: LU632_RS03335 - ABC transporter ATP-binding protein, at 683,528 to 684,571 _RS03335 LU632_RS03340: LU632_RS03340 - iron ABC transporter permease, at 684,573 to 686,069 _RS03340 Position (kb) 683 684 685Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 682.729 kb on - strand, within LU632_RS03330at 682.729 kb on - strand, within LU632_RS03330at 682.839 kb on + strand, within LU632_RS03330at 682.840 kb on - strand, within LU632_RS03330at 682.840 kb on - strand, within LU632_RS03330at 682.840 kb on - strand, within LU632_RS03330at 682.841 kb on + strand, within LU632_RS03330at 682.842 kb on - strand, within LU632_RS03330at 682.842 kb on - strand, within LU632_RS03330at 682.899 kb on + strand, within LU632_RS03330at 682.899 kb on + strand, within LU632_RS03330at 682.900 kb on - strand, within LU632_RS03330at 682.900 kb on - strand, within LU632_RS03330at 682.900 kb on - strand, within LU632_RS03330at 682.900 kb on - strand, within LU632_RS03330at 682.900 kb on - strand, within LU632_RS03330at 682.905 kb on + strand, within LU632_RS03330at 682.906 kb on - strand, within LU632_RS03330at 682.925 kb on + strand, within LU632_RS03330at 683.029 kb on + strandat 683.057 kb on - strandat 683.057 kb on - strandat 683.071 kb on + strandat 683.071 kb on + strandat 683.071 kb on + strandat 683.076 kb on + strandat 683.126 kb on + strandat 683.127 kb on - strandat 683.156 kb on + strandat 683.156 kb on + strandat 683.207 kb on + strandat 683.207 kb on + strandat 683.307 kb on - strandat 683.307 kb on - strandat 683.350 kb on + strandat 683.350 kb on + strandat 683.384 kb on + strandat 683.385 kb on - strandat 683.385 kb on - strandat 683.385 kb on - strandat 683.418 kb on + strandat 683.425 kb on + strandat 683.426 kb on - strandat 683.454 kb on + strandat 683.455 kb on - strandat 683.540 kb on - strandat 683.709 kb on - strand, within LU632_RS03335at 683.738 kb on + strand, within LU632_RS03335at 683.876 kb on - strand, within LU632_RS03335at 684.196 kb on - strand, within LU632_RS03335at 684.367 kb on + strand, within LU632_RS03335at 684.547 kb on + strandat 684.571 kb on + strandat 684.571 kb on + strandat 684.572 kb on - strandat 684.572 kb on - strandat 684.574 kb on + strandat 684.574 kb on + strandat 684.575 kb on - strandat 684.653 kb on - strandat 684.946 kb on + strand, within LU632_RS03340at 685.176 kb on + strand, within LU632_RS03340at 685.446 kb on - strand, within LU632_RS03340at 685.534 kb on + strand, within LU632_RS03340

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction HBM-Glucose
remove
682,729 - LU632_RS03330 0.67 -0.8
682,729 - LU632_RS03330 0.67 -2.9
682,839 + LU632_RS03330 0.78 -0.3
682,840 - LU632_RS03330 0.78 -4.5
682,840 - LU632_RS03330 0.78 -0.3
682,840 - LU632_RS03330 0.78 -0.8
682,841 + LU632_RS03330 0.78 -0.3
682,842 - LU632_RS03330 0.78 -3.9
682,842 - LU632_RS03330 0.78 -3.2
682,899 + LU632_RS03330 0.84 -3.9
682,899 + LU632_RS03330 0.84 -3.0
682,900 - LU632_RS03330 0.84 -2.5
682,900 - LU632_RS03330 0.84 -3.1
682,900 - LU632_RS03330 0.84 -2.7
682,900 - LU632_RS03330 0.84 -3.9
682,900 - LU632_RS03330 0.84 -0.8
682,905 + LU632_RS03330 0.85 -2.3
682,906 - LU632_RS03330 0.85 -1.8
682,925 + LU632_RS03330 0.87 -0.8
683,029 + -2.1
683,057 - +0.4
683,057 - -3.4
683,071 + +0.2
683,071 + +0.2
683,071 + +0.6
683,076 + +1.5
683,126 + -0.4
683,127 - +0.2
683,156 + +0.2
683,156 + +0.1
683,207 + -0.3
683,207 + -0.3
683,307 - -0.2
683,307 - +0.2
683,350 + -0.5
683,350 + -0.1
683,384 + +0.5
683,385 - +0.2
683,385 - -0.0
683,385 - -0.0
683,418 + -0.3
683,425 + -0.5
683,426 - -0.2
683,454 + +0.0
683,455 - -0.9
683,540 - +0.3
683,709 - LU632_RS03335 0.17 -0.3
683,738 + LU632_RS03335 0.20 -0.7
683,876 - LU632_RS03335 0.33 -0.1
684,196 - LU632_RS03335 0.64 -0.6
684,367 + LU632_RS03335 0.80 -0.5
684,547 + +0.1
684,571 + -0.4
684,571 + +0.0
684,572 - -1.2
684,572 - +0.3
684,574 + -0.8
684,574 + -0.5
684,575 - -0.4
684,653 - -0.2
684,946 + LU632_RS03340 0.25 -0.3
685,176 + LU632_RS03340 0.40 -0.4
685,446 - LU632_RS03340 0.58 -0.1
685,534 + LU632_RS03340 0.64 -0.1

Or see this region's nucleotide sequence