Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mtnA and mtnK are separated by 151 nucleotides mtnK and LU632_RS01125 are separated by 74 nucleotides LU632_RS01125 and LU632_RS01130 are separated by 130 nucleotides
LU632_RS01115: mtnA - S-methyl-5-thioribose-1-phosphate isomerase, at 237,664 to 238,695
mtnA
LU632_RS01120: mtnK - S-methyl-5-thioribose kinase, at 238,847 to 240,032
mtnK
LU632_RS01125: LU632_RS01125 - IS5/IS1182 family transposase, at 240,107 to 240,743
_RS01125
LU632_RS01130: LU632_RS01130 - acyl-CoA dehydrogenase family protein, at 240,874 to 241,640
_RS01130
Position (kb) 238
239
240
241 Strain fitness (log2 ratio) -2
-1
0
1 at 237.874 kb on - strand, within mtnA at 237.906 kb on + strand, within mtnA at 237.907 kb on - strand, within mtnA at 237.907 kb on - strand, within mtnA at 237.926 kb on + strand, within mtnA at 237.968 kb on + strand, within mtnA at 237.969 kb on - strand, within mtnA at 237.969 kb on - strand, within mtnA at 238.096 kb on - strand, within mtnA at 238.260 kb on + strand, within mtnA at 238.261 kb on - strand, within mtnA at 238.261 kb on - strand, within mtnA at 238.265 kb on - strand, within mtnA at 238.265 kb on - strand, within mtnA at 238.309 kb on - strand, within mtnA at 238.327 kb on - strand, within mtnA at 238.327 kb on - strand, within mtnA at 238.327 kb on - strand, within mtnA at 238.346 kb on - strand, within mtnA at 238.346 kb on - strand, within mtnA at 238.346 kb on - strand, within mtnA at 238.453 kb on + strand, within mtnA at 238.513 kb on + strand, within mtnA at 238.514 kb on - strand, within mtnA at 238.566 kb on + strand, within mtnA at 238.648 kb on + strand at 238.649 kb on - strand at 238.670 kb on - strand at 238.681 kb on - strand at 238.685 kb on - strand at 238.729 kb on - strand at 238.754 kb on + strand at 238.754 kb on + strand at 238.774 kb on - strand at 238.846 kb on - strand at 238.856 kb on + strand at 238.861 kb on + strand at 238.861 kb on + strand at 238.862 kb on - strand at 238.889 kb on + strand at 238.889 kb on + strand at 238.889 kb on + strand at 238.890 kb on - strand at 238.890 kb on - strand at 238.890 kb on - strand at 239.114 kb on + strand, within mtnK at 239.114 kb on + strand, within mtnK at 239.115 kb on - strand, within mtnK at 239.115 kb on - strand, within mtnK at 239.155 kb on + strand, within mtnK at 239.247 kb on + strand, within mtnK at 239.269 kb on - strand, within mtnK at 239.269 kb on - strand, within mtnK at 239.284 kb on - strand, within mtnK at 239.393 kb on + strand, within mtnK at 239.586 kb on + strand, within mtnK at 239.587 kb on - strand, within mtnK at 239.640 kb on + strand, within mtnK at 239.640 kb on + strand, within mtnK at 239.640 kb on + strand, within mtnK at 239.894 kb on + strand, within mtnK at 239.896 kb on + strand, within mtnK at 239.896 kb on + strand, within mtnK at 239.896 kb on + strand, within mtnK at 239.897 kb on - strand, within mtnK at 239.897 kb on - strand, within mtnK at 239.897 kb on - strand, within mtnK at 239.984 kb on + strand at 239.985 kb on - strand at 240.084 kb on - strand at 240.084 kb on - strand at 240.119 kb on - strand at 240.841 kb on - strand at 240.841 kb on - strand at 240.989 kb on + strand, within LU632_RS01130
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 237,874 - mtnA LU632_RS01115 0.20 -0.2 237,906 + mtnA LU632_RS01115 0.23 +1.2 237,907 - mtnA LU632_RS01115 0.24 -0.1 237,907 - mtnA LU632_RS01115 0.24 +0.1 237,926 + mtnA LU632_RS01115 0.25 +0.8 237,968 + mtnA LU632_RS01115 0.29 -0.3 237,969 - mtnA LU632_RS01115 0.30 +0.5 237,969 - mtnA LU632_RS01115 0.30 +0.8 238,096 - mtnA LU632_RS01115 0.42 +0.0 238,260 + mtnA LU632_RS01115 0.58 -2.4 238,261 - mtnA LU632_RS01115 0.58 -0.4 238,261 - mtnA LU632_RS01115 0.58 +0.1 238,265 - mtnA LU632_RS01115 0.58 -0.8 238,265 - mtnA LU632_RS01115 0.58 +0.0 238,309 - mtnA LU632_RS01115 0.62 -0.1 238,327 - mtnA LU632_RS01115 0.64 -0.8 238,327 - mtnA LU632_RS01115 0.64 +0.1 238,327 - mtnA LU632_RS01115 0.64 -1.5 238,346 - mtnA LU632_RS01115 0.66 +0.3 238,346 - mtnA LU632_RS01115 0.66 -0.1 238,346 - mtnA LU632_RS01115 0.66 -0.1 238,453 + mtnA LU632_RS01115 0.76 -0.0 238,513 + mtnA LU632_RS01115 0.82 -0.2 238,514 - mtnA LU632_RS01115 0.82 -0.8 238,566 + mtnA LU632_RS01115 0.87 -0.4 238,648 + +0.6 238,649 - +1.1 238,670 - +0.2 238,681 - -1.8 238,685 - +0.6 238,729 - +1.0 238,754 + +0.9 238,754 + -0.2 238,774 - -0.4 238,846 - +0.3 238,856 + -0.4 238,861 + -0.4 238,861 + -0.2 238,862 - -0.1 238,889 + +1.4 238,889 + -0.0 238,889 + -0.3 238,890 - +1.4 238,890 - +1.1 238,890 - +0.3 239,114 + mtnK LU632_RS01120 0.23 +1.1 239,114 + mtnK LU632_RS01120 0.23 -0.2 239,115 - mtnK LU632_RS01120 0.23 +0.2 239,115 - mtnK LU632_RS01120 0.23 -0.1 239,155 + mtnK LU632_RS01120 0.26 +0.1 239,247 + mtnK LU632_RS01120 0.34 -0.5 239,269 - mtnK LU632_RS01120 0.36 -1.0 239,269 - mtnK LU632_RS01120 0.36 +0.6 239,284 - mtnK LU632_RS01120 0.37 -0.3 239,393 + mtnK LU632_RS01120 0.46 +0.4 239,586 + mtnK LU632_RS01120 0.62 -0.2 239,587 - mtnK LU632_RS01120 0.62 +0.4 239,640 + mtnK LU632_RS01120 0.67 -0.2 239,640 + mtnK LU632_RS01120 0.67 -0.1 239,640 + mtnK LU632_RS01120 0.67 +0.1 239,894 + mtnK LU632_RS01120 0.88 -0.2 239,896 + mtnK LU632_RS01120 0.88 +0.6 239,896 + mtnK LU632_RS01120 0.88 +0.2 239,896 + mtnK LU632_RS01120 0.88 -0.7 239,897 - mtnK LU632_RS01120 0.89 -0.1 239,897 - mtnK LU632_RS01120 0.89 -0.2 239,897 - mtnK LU632_RS01120 0.89 +0.8 239,984 + -1.2 239,985 - -0.8 240,084 - +0.3 240,084 - -1.1 240,119 - -0.7 240,841 - -2.0 240,841 - -0.6 240,989 + LU632_RS01130 0.15 +0.4
Or see this region's nucleotide sequence